Email l.a.kelley@imperial.ac.uk Description P47768 Date Tue Jul 17 17:05:10 BST 2012 Unique Job ID a484637e4f5d2acd

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1smyc_ 100.0 54 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta 2 c3iydC_ 100.0 58 PDB header:transcription/dna Chain: C: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex 3 d1ynjc1 100.0 55 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta 4 c2pmzB_ 100.0 29 PDB header:translation, transferase Chain: B: PDB Molecule:dna-directed rna polymerase subunit b; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 5 c3h0gN_ 100.0 26 PDB header:transcription Chain: N: PDB Molecule:dna-directed rna polymerase ii subunit rpb2; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 6 d1twfb_ 100.0 25 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta 7 c3mlqD_ 100.0 62 PDB header:transferase/transcription Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain 8 c3mlqB_ 100.0 63 PDB header:transferase/transcription Chain: B: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain 9 c3tbiB_ 99.9 44 PDB header:transcription Chain: B: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of t4 gp33 bound to e. coli rnap beta-flap domain 10 c3ltiA_ 99.9 60 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains 11 c3qqcA_ 99.2 24 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit b, dna-directed rna PDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain 12 d1r46a1 47.4 16 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 13 d1zq1c1 36.0 42 Fold:GatB/YqeY motif Superfamily:GatB/YqeY motif Family:GatB/GatE C-terminal domain-like 14 d1n26a2 31.4 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 15 d1d02a_ 30.3 17 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease MunI 16 d1nbwa1 27.4 14 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Swiveling domain of dehydratase reactivase alpha subunit Family:Swiveling domain of dehydratase reactivase alpha subunit 17 d1uj4a2 27.3 24 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 18 c2gtiA_ 26.9 16 PDB header:viral protein Chain: A: PDB Molecule:replicase polyprotein 1ab; PDBTitle: mutation of mhv coronavirus non-structural protein nsp15 (f307l) 19 d1gm5a4 23.9 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 20 c1uj6A_ 23.2 15 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate 21 d2d0oa1 not modelled 21.9 13 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Swiveling domain of dehydratase reactivase alpha subunit Family:Swiveling domain of dehydratase reactivase alpha subunit 22 c3lvwA_ not modelled 21.4 12 PDB header:ligase Chain: A: PDB Molecule:glutamate--cysteine ligase; PDBTitle: glutathione-inhibited scgcl 23 c3mjhD_ not modelled 21.4 50 PDB header:protein transport Chain: D: PDB Molecule:early endosome antigen 1; PDBTitle: crystal structure of human rab5a in complex with the c2h2 zinc finger2 of eea1 24 c3kdeC_ not modelled 21.2 16 PDB header:dna binding protein/dna Chain: C: PDB Molecule:transposable element p transposase; PDBTitle: crystal structure of the thap domain from d. melanogaster p-element2 transposase in complex with its natural dna binding site 25 d1lk5a2 not modelled 21.2 12 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 26 c3cwiA_ not modelled 21.1 22 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 27 c2c2lD_ not modelled 20.6 24 PDB header:chaperone Chain: D: PDB Molecule:carboxy terminus of hsp70-interacting protein; PDBTitle: crystal structure of the chip u-box e3 ubiquitin ligase 28 d1y4oa1 not modelled 20.0 47 Fold:Profilin-like Superfamily:Roadblock/LC7 domain Family:Roadblock/LC7 domain 29 d1ujpa_ not modelled 19.8 26 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 30 c2db3D_ not modelled 19.8 43 PDB header:hydrolase/rna Chain: D: PDB Molecule:atp-dependent rna helicase vasa; PDBTitle: structural basis for rna unwinding by the dead-box protein2 drosophila vasa 31 d2eyqa5 not modelled 19.4 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 32 c2q8nB_ not modelled 19.0 18 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of glucose-6-phosphate isomerase (ec2 5.3.1.9) (tm1385) from thermotoga maritima at 1.82 a3 resolution 33 c1nbwA_ not modelled 18.6 16 PDB header:hydrolase Chain: A: PDB Molecule:glycerol dehydratase reactivase alpha subunit; PDBTitle: glycerol dehydratase reactivase 34 d1jbja1 not modelled 18.2 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 35 c2pjmA_ not modelled 17.7 21 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 36 d1xiwb_ not modelled 16.9 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 37 d1cf2o2 not modelled 16.6 34 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 38 d1zcea1 not modelled 16.6 17 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 39 d1prtc1 not modelled 15.8 19 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits 40 d1prtb1 not modelled 15.5 19 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits 41 c2fyuE_ not modelled 15.5 43 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit, PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor 42 d1sy6a1 not modelled 15.5 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 43 c3l7oB_ not modelled 15.4 15 PDB header:isomerase Chain: B: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159 44 c2g5iB_ not modelled 14.9 17 PDB header:ligase Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase PDBTitle: structure of trna-dependent amidotransferase gatcab2 complexed with adp-alf4 45 d1xmwa2 not modelled 14.8 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 46 c1bcpH_ not modelled 13.7 19 PDB header:toxin Chain: H: PDB Molecule:pertussis toxin; PDBTitle: binary complex of pertussis toxin and atp 47 c3bxzA_ not modelled 13.2 33 PDB header:transport protein Chain: A: PDB Molecule:preprotein translocase subunit seca; PDBTitle: crystal structure of the isolated dead motor domains from2 escherichia coli seca 48 d1m5ha1 not modelled 12.4 42 Fold:Ferredoxin-like Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase 49 d1tf5a4 not modelled 12.2 33 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 50 d1m0sa2 not modelled 12.2 19 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 51 d1m5sa1 not modelled 12.1 42 Fold:Ferredoxin-like Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase 52 d1ftra1 not modelled 12.1 46 Fold:Ferredoxin-like Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase 53 c2uv0G_ not modelled 12.0 25 PDB header:transcription Chain: G: PDB Molecule:transcriptional activator protein lasr; PDBTitle: structure of the p. aeruginosa lasr ligand-binding domain2 bound to its autoinducer 54 d2d6fc2 not modelled 11.8 46 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 55 c3c4iA_ not modelled 11.8 13 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein hu homolog; PDBTitle: crystal structure analysis of n terminal region containing the2 dimerization domain and dna binding domain of hu protein(histone like3 protein-dna binding) from mycobacterium tuberculosis [h37rv] 56 c1gjjA_ not modelled 11.6 33 PDB header:membrane protein Chain: A: PDB Molecule:lap2; PDBTitle: n-terminal constant region of the nuclear envelope protein2 lap2 57 d1dcza_ not modelled 11.5 33 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 58 c3u5cI_ not modelled 11.3 22 PDB header:ribosome Chain: I: PDB Molecule:40s ribosomal protein s8-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome a 59 c1pd7B_ not modelled 11.0 60 PDB header:transcription Chain: B: PDB Molecule:mad1; PDBTitle: extended sid of mad1 bound to the pah2 domain of msin3b 60 d2gtia2 not modelled 10.8 10 Fold:EndoU-like Superfamily:EndoU-like Family:Nsp15 C-terminal domain-like 61 c3dlaD_ not modelled 10.5 14 PDB header:ligase Chain: D: PDB Molecule:glutamine-dependent nad(+) synthetase; PDBTitle: x-ray crystal structure of glutamine-dependent nad+ synthetase from2 mycobacterium tuberculosis bound to naad+ and don 62 c1jbjA_ not modelled 10.4 18 PDB header:immune system Chain: A: PDB Molecule:cd3 epsilon and gamma ectodomain fragment PDBTitle: cd3 epsilon and gamma ectodomain fragment complex in single-2 chain construct 63 c6paxA_ not modelled 10.4 22 PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions 64 c2vb0A_ not modelled 10.1 21 PDB header:hydrolase Chain: A: PDB Molecule:polyprotein 3bcd; PDBTitle: crystal structure of coxsackievirus b3 proteinase 3c 65 d1flja_ not modelled 9.8 25 Fold:Carbonic anhydrase Superfamily:Carbonic anhydrase Family:Carbonic anhydrase 66 c1lk5C_ not modelled 9.8 14 PDB header:isomerase Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase; PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii 67 c3qp1A_ not modelled 9.7 30 PDB header:transcription Chain: A: PDB Molecule:cvir transcriptional regulator; PDBTitle: crystal structure of cvir ligand-binding domain bound to the native2 ligand c6-hsl 68 d1aola_ not modelled 9.7 23 Fold:ENV polyprotein, receptor-binding domain Superfamily:ENV polyprotein, receptor-binding domain Family:ENV polyprotein, receptor-binding domain 69 c1m1jA_ not modelled 9.7 50 PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands 70 d1o8ba2 not modelled 9.5 19 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 71 c2f1mA_ not modelled 9.4 20 PDB header:transport protein Chain: A: PDB Molecule:acriflavine resistance protein a; PDBTitle: conformational flexibility in the multidrug efflux system protein acra 72 c2nu9E_ not modelled 9.3 21 PDB header:ligase Chain: E: PDB Molecule:succinyl-coa synthetase beta chain; PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form 73 d1wgma_ not modelled 9.2 11 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 74 d1px5a1 not modelled 9.1 28 Fold:PAP/OAS1 substrate-binding domain Superfamily:PAP/OAS1 substrate-binding domain Family:2'-5'-oligoadenylate synthetase 1, OAS1, second domain 75 d2f3na1 not modelled 9.1 13 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 76 d1b7go2 not modelled 9.0 23 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 77 c2p5zX_ not modelled 8.9 17 PDB header:structural genomics, unknown function Chain: X: PDB Molecule:type vi secretion system component; PDBTitle: the e. coli c3393 protein is a component of the type vi secretion2 system and exhibits structural similarity to t4 bacteriophage tail3 proteins gp27 and gp5 78 d1y5ic1 not modelled 8.9 15 Fold:Heme-binding four-helical bundle Superfamily:Respiratory nitrate reductase 1 gamma chain Family:Respiratory nitrate reductase 1 gamma chain 79 c2oy7A_ not modelled 8.8 11 PDB header:membrane protein Chain: A: PDB Molecule:outer surface protein a; PDBTitle: the crystal structure of ospa mutant 80 d2hz5a1 not modelled 8.8 47 Fold:Profilin-like Superfamily:Roadblock/LC7 domain Family:Roadblock/LC7 domain 81 d1jqna_ not modelled 8.7 44 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase 82 d2p5zx2 not modelled 8.6 17 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 83 d2pxyd2 not modelled 8.6 44 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 84 d1h59b_ not modelled 8.5 38 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Growth factor receptor domain Family:Growth factor receptor domain 85 d2guja1 not modelled 8.5 25 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:XkdM-like 86 c1m0sA_ not modelled 8.5 16 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: northeast structural genomics consortium (nesg id ir21) 87 c2j8qB_ not modelled 8.5 40 PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. 88 c1lkzB_ not modelled 8.3 14 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase a; PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli. 89 c3ghgD_ not modelled 8.3 33 PDB header:blood clotting Chain: D: PDB Molecule:fibrinogen alpha chain; PDBTitle: crystal structure of human fibrinogen 90 d2pwwa1 not modelled 8.3 8 Fold:TBP-like Superfamily:YugN-like Family:YugN-like 91 d1m6ia3 not modelled 8.2 43 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain 92 c2aujD_ not modelled 8.1 33 PDB header:transferase Chain: D: PDB Molecule:dna-directed rna polymerase beta' chain; PDBTitle: structure of thermus aquaticus rna polymerase beta'-subunit2 insert 93 d1ooha_ not modelled 8.1 33 Fold:EF Hand-like Superfamily:Insect pheromone/odorant-binding proteins Family:Insect pheromone/odorant-binding proteins 94 d1pfva2 not modelled 8.0 40 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 95 d1u1ia1 not modelled 8.0 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 96 d1k8ba_ not modelled 8.0 36 Fold:Ribosome binding domain-like Superfamily:Translation initiation factor 2 beta, aIF2beta, N-terminal domain Family:Translation initiation factor 2 beta, aIF2beta, N-terminal domain 97 c1p84E_ not modelled 8.0 43 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 98 c2kkpA_ not modelled 8.0 36 PDB header:dna binding protein Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of the phage integrase sam-like2 domain from moth 1796 from moorella thermoacetica.3 northeast structural genomics consortium target mtr39k4 (residues 64-171). 99 d1uoua3 not modelled 7.9 16 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain