Job Description P47768 Confidence 100.00% Date Tue Jul 17 17:05:10 BST 2012 Rank 3 Aligned Residues 1046 % Identity 55% Template d1ynjc1 SCOP info beta and beta-prime subunits of DNA dependent RNA-polymerase beta and beta-prime subunits of DNA dependent RNA-polymerase RNA-polymerase beta Resolution 3.20

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.											.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.																		.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.																		.	.	.
Query Sequence		R	N	Y	A	R	I	S	E	V	L	E	L	P	N	L	I	E	I	Q	T	K	S	Y	E	W	F	L	R	E	.	.	.	.	.	.	.	.	.	.	G	L	I	E	M	F	R	D	I	S	P	I	E	D	F	T	G	.	.	.	N	L	S	L	E	F	V	D	Y	R	L	G	E	P	K	Y	D	L	E	E	S
Query Conservation																															.	.	.	.	.	.	.	.	.	.																		.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation
Template Sequence		K	R	F	G	R	I	R	E	V	I	P	L	P	P	L	T	E	I	Q	V	E	S	Y	K	K	A	L	Q	A	D	V	P	P	E	K	R	E	N	V	G	I	Q	A	A	F	K	E	T	F	P	I	E	E	G	D	K	G	K	G	G	L	V	L	D	F	L	E	Y	R	I	G	D	P	P	F	S	Q	D	E	C
Template Known Secondary structure										S	S					S	T									T	T			T	T	S		T	T				S	S								T	T		B				S	S	S	S	S	S															S	S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	R	D	A	T	Y	A	A	P	L	R	V	K	V	R	L	I	I	K	E	T	G	E	V	K	E	Q	E	V	F	M	G	D	F	P	L	M	T	D	T	G	T	F	V	I	N	G	A	E	R	V	I	V	S	Q	L	V	R	S	P	S	V	Y	F	N	E	K	I	D	K	N	G	R	E	N	Y	D	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	K	D	L	T	Y	Q	A	P	L	Y	A	R	L	Q	L	I	H	K	D	T	G	L	I	K	E	D	E	V	F	L	G	H	L	P	L	M	T	E	D	G	S	F	I	I	N	G	A	D	R	V	I	V	S	Q	I	H	R	S	P	G	V	Y	F	T	P	D	P	A	R	P	G	R	Y	I	A	S	I	I
Template Known Secondary structure					T													B			S	S				B			S												S	S	S					S	S	S												S						B		T	T	S	T	T		B
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		I	I	P	N	R	G	A	W	L	E	Y	E	T	D	A	K	D	V	V	Y	V	R	I	D	R	T	R	K	L	P	L	T	V	L	L	R	A	L	G	F	S	S	D	Q	E	I	V	D	L	L	G	D	N	E	Y	L	R	N	T	L	E	K	D	G	.	T	E	N	T	E	Q	A	L	L	E	I	Y	E	R	L
Query Conservation																																																																		.
Alig confidence																													.																																					.
Template Conservation																													.
Template Sequence		P	L	P	K	R	G	P	W	I	D	L	E	V	E	A	S	G	V	V	T	M	K	V	N	K	R	K	.	F	P	L	V	L	L	L	R	V	L	G	Y	D	Q	E	T	L	V	R	E	L	S	A	Y	G	D	L	V	Q	G	L	L	D	E	A	V	L	A	M	R	P	E	E	A	M	V	R	L	F	T	L	L
Template Known Secondary structure			S	T	T	S	S									T	T								T	T			.										T	T												S	S	S	S										T	T	S
Template Predicted Secondary structure																													.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	G	E	P	P	T	V	E	N	A	K	S	L	L	Y	S	R	F	F	D	P	K	R	Y	D	L	A	S	V	G	R	Y	K	T	N	K	K	L	H	L	K	H	R	L	F	N	Q	K	L	A	E	P	I	V	N	T	E	T	G	E	I	V	V	E	E	G	T	V	L	D	R	R	K	I	D	E	I	M	D
Query Conservation
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	P	G	D	P	P	K	K	D	K	A	L	A	Y	L	F	G	L	L	A	D	P	K	R	Y	D	L	G	E	A	G	R	Y	K	A	E	E	K	L	G	V	G	L	S	G	R	T	L	V	R	F	E	D	G	E	F	K	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S	S				S	T	T					T	T	T	S	S	S	S	S	S			S		S	S	S	T	T							T	T	T	S				S	S	S	S	B		B	T	T	T	B		B		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.			.	.	.	.	.
Predicted Secondary structure																																																																											.	.
Query SS confidence																																																																											.	.
Query Sequence		V	L	E	S	N	A	N	S	E	V	F	E	L	H	G	S	V	I	D	E	P	V	E	I	Q	S	I	K	V	Y	V	P	N	D	D	E	G	R	T	T	T	V	I	G	N	A	F	P	D	S	E	V	K	C	I	T	P	A	D	I	I	A	S	M	S	Y	F	F	N	L	L	S	G	.	.	I	G	Y	T	D
Query Conservation																																																																											.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	L	P	T	L	R	Y	L	F	A	L	T	A	G	V	P	G	H	E	V	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S										T	T	S	S			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																												302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	D	H	L	G	N	R	R	L	R	S	V	G	E	L	L	Q	N	Q	F	R	I	G	L	S	R	M	E	R	V	V	R	E	R	M	S	I	Q	D	T	E	S	I	T	P	Q	Q	L	I	N	I	R	P	V	I	A	S	I	K	E	F	F	G	S	S	Q	L	S	Q	F	M	D	Q	A	N	P	L	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	D	H	L	G	N	R	R	I	R	T	V	G	E	L	M	A	D	Q	F	R	V	G	L	A	R	L	A	R	G	V	R	E	R	M	V	M	G	S	P	D	T	L	T	P	A	K	L	V	N	S	R	P	L	E	A	A	L	R	E	F	F	S	R	S	Q	L	S	Q	F	K	D	E	T	N	P	L	S	S
Template Known Secondary structure			T	T	S	T	T	S																																S		T	T	T			T	T	T	S			S	S														T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	H	K	R	R	L	S	A	L	G	P	G	G	L	T	R	E	R	A	Q	M	E	V	R	D	V	H	Y	S	H	Y	G	R	M	C	P	I	E	T	P	E	G	P	N	I	G	L	I	N	S	L	S	S	Y	A	R	V	N	E	F	G	F	I	E	T	P	Y	R	K	V	D	L	D	T	H	A	I	T	D
Query Conservation
Alig confidence																																																																											.	.
Template Conservation																																																																											.	.
Template Sequence		L	R	H	K	R	R	I	S	A	L	G	P	G	G	L	T	R	E	R	A	G	F	D	V	R	D	V	H	R	T	H	Y	G	R	I	C	P	V	E	T	P	E	G	A	N	I	G	L	I	T	S	L	A	A	Y	A	R	V	D	A	L	G	F	I	R	T	P	Y	R	R	V	K	N	.	.	G	V	V	T	E
Template Known Secondary structure						T				S		S	S	S	S	S			T	T			S	T	T	T	S			T	T		T	T	T	B		S	S				S	S	S	S	T	T	T				B		T	T					T	T	S				B							T	.	.	T
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.			.	.	.	480	.
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	D	Y	L	T	A	D	E	E	D	S	Y	V	V	A	Q	A	N	S	K	L	D	E	N	G	R	F	M	D	D	E	V	V	C	R	F	R	G	N	N	T	V	M	A	K	E	K	M	D	Y	M	D	V	S	P	K	Q	V	V	S	A	A	T	A	C	I	P	F	L	E	N	D	D	S	N	R	A	L	M
Query Conservation
Alig confidence																												.
Template Conservation																												.
Template Sequence		E	V	V	Y	M	T	A	S	E	E	D	R	Y	T	I	A	Q	A	N	T	P	L	E	G	D	R	.	I	A	T	D	R	V	V	A	R	R	R	G	E	P	V	I	V	A	P	E	E	V	E	F	M	D	V	S	P	K	Q	V	F	S	L	N	T	N	L	I	P	F	L	E	H	D	D	A	N	R	A	L	M
Template Known Secondary structure						B		S	S	T	T	T	T	S					S	S	S			B	T	T	B	.				S	S						T	T							G	G	G						S		G	G	G	G	S		T	T	G	G	G		T	T	G	G	G	B
Template Predicted Secondary structure																												.
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.		.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
		639	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700						.	.	.	.	.	.	.	.	.	710	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.
Query Sequence		G	A	N	M	Q	R	Q	A	V	P	L	M	N	P	E	A	P	F	V	G	T	G	M	E	H	V	A	A	R	D	S	G	A	A	I	T	A	K	H	R	G	R	V	E	H	V	E	S	N	E	I	L	V	R	R	L	V	E	E	N	G	V	.	.	.	.	.	E	H	E	G	E	L	D	R	Y	P	L	A	K
Query Conservation																																																																.	.	.	.	.
Alig confidence																																																																.	.	.	.	.
Template Conservation
Template Sequence		G	S	N	M	Q	T	Q	A	V	P	L	I	R	A	Q	A	P	V	V	M	T	G	L	E	E	R	V	V	R	D	S	L	A	A	L	Y	A	E	E	D	G	E	V	V	K	V	D	G	T	R	I	A	V	R	Y	E	D	G	R	L	V	E	H	P	L	R	R	Y	A	R	S	N	Q	G	T	A	F	D	Q	R
Template Known Secondary structure				S	S	T	T	S					T	T		B			S				S										T		S				S	S	S								S	S							S	S	S										S	B			T	T	S			B
Template Predicted Secondary structure
Template SS confidence
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640
		714	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	R	S	N	S	G	T	C	Y	N	Q	R	P	I	V	A	V	G	D	V	V	E	Y	N	E	I	L	A	D	G	P	S	M	E	L	G	E	M	A	L	G	R	N	V	V	V	G	F	M	T	W	D	G	Y	N	Y	E	D	A	V	I	M	S	E	R	L	V	K	D	D	V	Y	T	S	I	H	I	E	E
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	R	V	R	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	V	K	K	G	D	L	L	A	D	G	P	A	S	E	E	G	F	L	A	L	G	Q	N	V	L	V	A	I	M	P	F	D	G	Y	N	F	E	D	A	I	V	I	S	E	E	L	L	K	R	D	F	Y	T	S	I	H	I	E	R
Template Known Secondary structure						S	S	.	.	.	.	.	.	.	.	.	.	.	.	.		B			S	S							S	S			T	T				S									S			S	S	T	T		T	T						T					T	T		S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		641	.	.	.	.	.														.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.
		794	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	S	E	A	R	D	T	K	L	G	P	E	E	I	T	R	D	I	P	N	V	S	E	S	A	L	K	N	L	D	D	R	G	I	V	Y	I	G	A	E	V	K	D	G	D	I	L	V	G	K	V	T	P	K	G	V	T	E	L	T	A	E	E	R	L	L	H	A	I	F	G	E	K	A	R	E	V	R	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	E	I	E	A	R	D	T	K	L	G	P	E	R	I	T	R	D	I	P	H	L	S	E	A	A	L	R	D	L	D	E	E	G	I	V	R	I	G	A	E	V	K	P	G	D	I	L	V	G	R	T	S	F	K	G	E	Q	E	P	S	P	E	E	R	L	L	R	S	I	F	G	E	K	A	R	D	V	K	D
Template Known Secondary structure										T	T				B			S			T	T			T	T	T	G	G	G	B		T	T	S	B	B		T	T					T	T			S	B			B	B									T	T								T						S		B
Template Predicted Secondary structure
Template SS confidence
		708	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.
		874	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	L	R	V	P	H	G	A	G	G	I	V	L	D	V	K	V	F	N	R	E	E	G	D	D	T	L	S	P	G	V	N	Q	L	V	R	V	Y	I	V	Q	K	R	K	I	H	V	G	D	K	M	C	G	R	H	G	N	K	G	V	I	S	K	I	V	P	E	E	D	M	P	Y	L	P	D	G	R	P	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	L	R	V	P	P	G	E	G	G	I	V	V	G	R	L	R	L	R	R	G	D	P	G	V	E	L	K	P	G	V	R	E	V	V	R	V	F	V	A	Q	K	R	K	L	Q	V	G	D	K	L	A	N	R	H	G	N	K	G	V	V	A	K	I	L	P	V	E	D	M	P	H	L	P	D	G	T	P	V
Template Known Secondary structure								T	T													S	S	S	T	T					T	T																	T	T						T	T												T	T	S	S		B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		788	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.
		954	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	I	M	L	N	P	L	G	V	P	S	R	M	N	I	G	Q	V	L	E	L	H	L	G	M	A	A	K	N	L	G	I	H	V	A	S	P	V	F	D	G	A	N	D	D	D	V	W	S	T	I	E	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	I	L	N	P	L	G	V	P	S	R	M	N	L	G	Q	I	L	E	T	H	L	G	L	A	G	Y	F	L	G	Q	R	Y	I	S	P	V	F	D	G	A	T	E	P	E	I	K	E	L	L	A	E	A	F	N	L	Y	F	G	K	R	Q	G	E	G	F	G	V	D	K	R	E	K	E	V	L	A	R	A
Template Known Secondary structure		S					G	G	G	T	T	T	S		B	T																T							T	T	T	S																									T
Template Predicted Secondary structure
Template SS confidence
		868	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.
																			1008	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	A	R	D	G	K	T	V	L	Y	D	G	R	T	G	E	P	F	D	N	R	I	S	V	G	V	M	Y	M	L	K	L	A	H	M	V	D	D	K	L	H	A	R	S	T	G	P	Y	S	L	V	T	Q	Q	P	L	G	G	K	A	Q	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	K	L	G	L	V	S	P	G	K	S	P	E	E	Q	L	K	E	L	F	D	L	G	K	V	V	L	Y	D	G	R	T	G	E	P	F	E	G	P	I	V	V	G	Q	M	F	I	M	K	L	Y	H	M	V	E	D	K	M	H	A	R	S	T	G	P	Y	S	L	I	T	Q	Q	P	L	G	G	K	A	Q	F
Template Known Secondary structure				T	T		S		T	T	S												T	T					B		S	S	S	S	S	B		S	S													S			T	T	T	S					S	S			B		T	T	T		S	B				S	S	S
Template Predicted Secondary structure
Template SS confidence
		948	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.
		1071	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	Q	R	F	G	E	M	E	V	W	A	L	E	A	Y	G	A	A	Y	T	L	Q	E	I	L	T	Y	K	S	D	D	T	V	G	R	V	K	T	Y	E	A	I	V	K	G	E	N	I	S	R	P	S	V	P	E	S	F	R	V	L	M	K	E	L	Q	S	L	G	L	D	V	K	V	M	D	E	Q	D	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G	Q	R	F	G	E	M	E	V	W	A	L	E	A	Y	G	A	A	H	T	L	Q	E	M	L	T	I	K	S	D	D	I	E	G	R	N	A	A	Y	Q	A	I	I	K	G	E	D	V	P	E	P	S	V	P	E	S	F	R	V	L	V	K	E	L	Q	A	L	A	L	D	V	Q	T	L	D	E	K	D	N
Template Known Secondary structure																	T	T										T	T	T	T	T													T	T	T								S													T	T	S						B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		1028	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.
		1151	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	E	M	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	V	D	I	F	E
Template Known Secondary structure		B			S
Template Predicted Secondary structure
Template SS confidence
		1108	.	1110	.	.	.