Job Description P47768 Confidence 99.94% Date Tue Jul 17 17:05:10 BST 2012 Rank 9 Aligned Residues 196 % Identity 44% Template c3tbiB_ PDB info PDB header:transcription Chain: B: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of t4 gp33 bound to e. coli rnap beta-flap domain Resolution 3.00 Å

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		789	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	I	E	E	Y	E	S	E	A	R	D	T	K	L	G	P	E	E	I	T	R	D	I	P	N	V	S	E	S	A	L	K	N	L	D	D	R	G	I	V	Y	I	G	A	E	V	K	D	G	D	I	L	V	G	K	V	T	P	K	G	V	T	E	L	T	A	E	E	R	L	L	H	A	I	F	G	E	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	H	I	Q	E	L	A	C	V	S	R	D	T	K	L	G	P	E	E	I	T	A	D	I	P	N	V	G	E	A	A	L	S	K	L	D	E	S	G	I	V	Y	I	G	A	E	V	T	G	G	D	I	L	V	G	K	V	T	P	K	G	E	T	Q	L	T	P	E	E	K	L	L	R	A	I	F	G	E	K	A
Template Known Secondary structure															T	T						S	S			S	S								T	B		T	T	S	B	B		T	T				B	T	T												G	G	G														T	T	S
Template Predicted Secondary structure
Template SS confidence
		831	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
		869	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		R	E	V	R	D	T	S	L	R	V	P	H	G	A	G	G	I	V	L	D	V	K	V	F	N	R	E	E	G	D	D	T	L	S	P	G	V	N	Q	L	V	R	V	Y	I	V	Q	K	R	K	I	H	V	G	D	K	M	C	G	R	H	G	N	K	G	V	I	S	K	I	V	P	E	E	D	M	P	Y	.	L
Query Conservation																																																																																.
Alig confidence																																										.	.																																					.
Template Conservation																																										.	.
Template Sequence		S	D	V	K	D	S	S	L	R	V	P	N	G	V	S	G	T	V	I	D	V	Q	V	F	T	R	D	G	V	E	K	D	K	R	A	L	E	I	E	E	.	.	X	Q	L	K	Q	A	K	K	D	L	S	E	E	L	Q	I	L	E	A	G	L	F	S	R	I	R	A	V	L	V	A	G	G	V	E	A	E	K
Template Known Secondary structure		S											S	S		B											B	T	T	S												.	.																															T	T	S
Template Predicted Secondary structure																																										.	.
Template SS confidence
		911	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950			.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.
		948	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.			.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		P	D	G	R	P	I	D	I	M	L	N	P	L	G	V	P	S	R	M	N	.	.	I	G	Q	V	L	E	L	H	L	G	M	A	A	K	N	L	G	I	H
Query Conservation																						.	.
Alig confidence																						.	.
Template Conservation
Template Sequence		L	D	K	L	P	R	D	R	W	L	E	L	G	L	T	D	E	E	K	Q	N	Q	L	E	Q	L	A	E	Q	Y	D	E	L	K	H	E	F	E	K	K	L
Template Known Secondary structure					S		G	G	G	T	T	T				S	S	S
Template Predicted Secondary structure
Template SS confidence
		989	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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