Job Description P47768 Confidence 99.21% Date Tue Jul 17 17:05:10 BST 2012 Rank 11 Aligned Residues 63 % Identity 24% Template c3qqcA_ PDB info PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit b, dna-directed rna PDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain Resolution 3.30 Å

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		1077	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	E	V	W	A	L	E	A	Y	G	A	A	Y	T	L	Q	E	I	L	T	Y	K	S	D	D	T	V	G	R	V	K	T	Y	E	A	I	V	K	G	E	N	I	S	R	P	S	V	P	E	S	F	R	V	L	M	K	E	L	Q	S	L	G	L	D	V	K	V	M	D	E	Q
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.
Template Sequence		K	T	E	V	W	V	C	E	N	C	G	H	.	.	.	.	.	.	.	.	.	I	A	L	E	D	K	R	R	R	R	V	Y	C	P	V	C	G	E	E	E	R	I	S	K	V	E	M	S	Y	A	F	K	L	L	L	D	E	L	K	A	M	V	I	R	P	K	L	N	L	S	E
Template Known Secondary structure									T	T	T			.	.	.	.	.	.	.	.	.	B					T	T	T	T					T	T	T			S	S	S																				T	T	B
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.										.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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