Job Description P47768 Confidence 14.87% Date Tue Jul 17 17:05:10 BST 2012 Rank 44 Aligned Residues 120 % Identity 17% Template c2g5iB_ PDB info PDB header:ligase Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase PDBTitle: structure of trna-dependent amidotransferase gatcab2 complexed with adp-alf4 Resolution 3.35 Å

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		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.						.	.	.	.	.	.	.	.	520		.	.										.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.										.			.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.										.			.	.	.	.	.	.	.	.	.
Query Sequence		L	S	A	L	G	P	G	G	L	T	R	E	R	A	Q	M	E	V	R	D	V	H	Y	S	H	Y	G	.	.	.	.	.	R	M	C	P	I	E	T	P	E	.	G	P	.	.	.	.	.	.	.	.	.	N	I	G	L	I	N	S	L	S	S	Y	A	R	V	N	E	F	G	F	I	E	T	P	Y	R	K	V
Query Conservation																													.	.	.	.	.										.			.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.												.	.	.							.	.	.	.	.										.			.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.												.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	H	V	.	.	.	.	E	L	K	T	D	S	K	M	F	S	P	.	.	.	S	P	A	H	F	G	A	E	P	N	S	N	T	N	V	I	D	L	A	Y	P	G	V	L	P	V	V	N	K	R	A	V	D	W	A	M	R	A	A	M	A	L	N	M	E	I	A	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					.	.	.	.					S	B		S	S	S	S	.	.	.	S	B	S	S			S	S	T	T		S			T	T	T	T	T		T	T																				T	T					.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.												.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.					.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.						.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.
Query SS confidence																																								.	.	.	.	.
Query Sequence		D	L	D	T	H	A	I	T	D	Q	I	D	Y	L	T	A	D	E	E	D	S	Y	V	V	A	Q	A	N	S	K	L	D	E	N	G	R	F	M	.	.	.	.	.	D	D	E	V	V	C	R	F	R	G	N	N	T	V	M	A	K	E	K	M	D	Y	M	D	V	S	P	K	Q	V	V	S	A	A	T	A	C
Query Conservation																																								.	.	.	.	.
Alig confidence		.	.	.																																				.	.	.	.	.																							.	.	.
Template Conservation		.	.	.																																																															.	.	.
Template Sequence		.	.	.	T	E	S	K	F	D	R	K	N	Y	F	Y	P	D	N	P	K	A	Y	Q	I	S	Q	F	D	Q	P	I	G	E	N	G	Y	I	D	I	E	V	D	G	E	T	K	R	I	G	I	T	R	L	H	M	E	E	D	A	G	K	S	T	H	K	.	.	.	G	E	Y	S	L	V	D	L	N	R	Q	G
Template Known Secondary structure		.	.	.	S												T	T		T	T	S						S	S	S		S											S	S	S																						.	.	.	S	S	S						S	S	T	T
Template Predicted Secondary structure		.	.	.																																																															.	.	.
Template SS confidence
					72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.
		625	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	F	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	L	I	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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