Email l.a.kelley@imperial.ac.uk Description O33599 Date Tue Jul 17 17:05:02 BST 2012 Unique Job ID 9adb4d7a0a807763

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2gu1A_ 100.0 18 PDB header:hydrolase Chain: A: PDB Molecule:zinc peptidase; PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae 2 c3sluB_ 100.0 31 PDB header:hydrolase Chain: B: PDB Molecule:m23 peptidase domain protein; PDBTitle: crystal structure of nmb0315 3 c2hsiB_ 100.0 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative peptidase m23; PDBTitle: crystal structure of putative peptidase m23 from2 pseudomonas aeruginosa, new york structural genomics3 consortium 4 d1qwya_ 100.0 96 Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Peptidoglycan hydrolase LytM 5 c2b44A_ 100.0 100 PDB header:hydrolase Chain: A: PDB Molecule:glycyl-glycine endopeptidase lytm; PDBTitle: truncated s. aureus lytm, p 32 2 1 crystal form 6 c3nyyA_ 100.0 21 PDB header:hydrolase Chain: A: PDB Molecule:putative glycyl-glycine endopeptidase lytm; PDBTitle: crystal structure of a putative glycyl-glycine endopeptidase lytm2 (rumgna_02482) from ruminococcus gnavus atcc 29149 at 1.60 a3 resolution 7 c3tufB_ 100.0 25 PDB header:signaling protein Chain: B: PDB Molecule:stage ii sporulation protein q; PDBTitle: structure of the spoiiq-spoiiiah pore forming complex. 8 c3uz0D_ 100.0 24 PDB header:transport protein Chain: D: PDB Molecule:stage ii sporulation protein q; PDBTitle: crystal structure of spoiiiah and spoiiq complex 9 c3it5B_ 100.0 22 PDB header:hydrolase Chain: B: PDB Molecule:protease lasa; PDBTitle: crystal structure of the lasa virulence factor from pseudomonas2 aeruginosa 10 c3csqC_ 99.9 24 PDB header:hydrolase Chain: C: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail 11 d2f3ga_ 96.7 21 Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like 12 d1glaf_ 96.5 21 Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like 13 d2gpra_ 96.3 21 Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like 14 d1gpra_ 96.2 19 Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like 15 d1ci3m2 95.6 23 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain 16 d1e2wa2 95.5 26 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain 17 c2lmcB_ 94.5 22 PDB header:transcription Chain: B: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: structure of t7 transcription factor gp2-e. coli rnap jaw domain2 complex 18 c2aukA_ 94.1 18 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase beta' chain; PDBTitle: structure of e. coli rna polymerase beta' g/g' insert 19 c1e2vB_ 94.0 26 PDB header:electron transport proteins Chain: B: PDB Molecule:cytochrome f; PDBTitle: n153q mutant of cytochrome f from chlamydomonas reinhardtii 20 c1q90A_ 93.8 26 PDB header:photosynthesis Chain: A: PDB Molecule:apocytochrome f; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii 21 c2jxmB_ not modelled 92.8 25 PDB header:electron transport Chain: B: PDB Molecule:cytochrome f; PDBTitle: ensemble of twenty structures of the prochlorothrix2 hollandica plastocyanin- cytochrome f complex 22 c1tu2B_ not modelled 90.3 26 PDB header:electron transport Chain: B: PDB Molecule:apocytochrome f; PDBTitle: the complex of nostoc cytochrome f and plastocyanin determin with2 paramagnetic nmr. based on the structures of cytochrome f and3 plastocyanin, 10 structures 23 c1ctmA_ not modelled 87.9 17 PDB header:electron transport(cytochrome) Chain: A: PDB Molecule:cytochrome f; PDBTitle: crystal structure of chloroplast cytochrome f reveals a2 novel cytochrome fold and unexpected heme ligation 24 c2l9yA_ not modelled 87.6 4 PDB header:sugar binding protein Chain: A: PDB Molecule:cvnh-lysm lectin; PDBTitle: solution structure of the mocvnh-lysm module from the rice blast2 fungus magnaporthe oryzae protein (mgg_03307) 25 d1bdoa_ not modelled 87.1 18 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 26 d1tu2b2 not modelled 86.4 26 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain 27 d1brwa3 not modelled 86.3 25 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 28 c1t5eB_ not modelled 85.3 26 PDB header:transport protein Chain: B: PDB Molecule:multidrug resistance protein mexa; PDBTitle: the structure of mexa 29 c3lnnB_ not modelled 84.8 35 PDB header:metal transport Chain: B: PDB Molecule:membrane fusion protein (mfp) heavy metal cation efflux PDBTitle: crystal structure of zneb from cupriavidus metallidurans 30 c2ejgD_ not modelled 84.8 26 PDB header:ligase Chain: D: PDB Molecule:149aa long hypothetical methylmalonyl-coa decarboxylase PDBTitle: crystal structure of the biotin protein ligase (mutation r48a) and2 biotin carboxyl carrier protein complex from pyrococcus horikoshii3 ot3 31 c2k33A_ not modelled 83.4 30 PDB header:membrane protein, transport protein Chain: A: PDB Molecule:acra; PDBTitle: solution structure of an n-glycosylated protein using in2 vitro glycosylation 32 c2f1mA_ not modelled 83.4 13 PDB header:transport protein Chain: A: PDB Molecule:acriflavine resistance protein a; PDBTitle: conformational flexibility in the multidrug efflux system protein acra 33 d1o78a_ not modelled 82.9 30 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 34 c2e75C_ not modelled 82.7 26 PDB header:photosynthesis Chain: C: PDB Molecule:apocytochrome f; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 35 c4dk1B_ not modelled 82.4 35 PDB header:membrane protein Chain: B: PDB Molecule:putative maca, multidrug resistance protein mexa; PDBTitle: crystal structure of maca-mexa chimeric protein, containing the2 pseudomonas aeruginosa mexa alpha-hairpin domain. 36 c2djpA_ not modelled 81.2 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein sb145; PDBTitle: the solution structure of the lysm domain of human2 hypothetical protein sb145 37 d1vf7a_ not modelled 81.1 23 Fold:HlyD-like secretion proteins Superfamily:HlyD-like secretion proteins Family:HlyD-like secretion proteins 38 c2kccA_ not modelled 79.8 17 PDB header:ligase Chain: A: PDB Molecule:acetyl-coa carboxylase 2; PDBTitle: solution structure of biotinoyl domain from human acetyl-2 coa carboxylase 2 39 c3fppB_ not modelled 79.0 30 PDB header:membrane protein Chain: B: PDB Molecule:macrolide-specific efflux protein maca; PDBTitle: crystal structure of e.coli maca 40 c2ejmA_ not modelled 78.4 43 PDB header:ligase Chain: A: PDB Molecule:methylcrotonoyl-coa carboxylase subunit alpha; PDBTitle: solution structure of ruh-072, an apo-biotnyl domain form2 human acetyl coenzyme a carboxylase 41 c2dn8A_ not modelled 77.9 30 PDB header:ligase Chain: A: PDB Molecule:acetyl-coa carboxylase 2; PDBTitle: solution structure of rsgi ruh-053, an apo-biotin carboxy2 carrier protein from human transcarboxylase 42 c2b8gA_ not modelled 77.9 26 PDB header:biosynthetic protein Chain: A: PDB Molecule:biotin/lipoyl attachment protein; PDBTitle: solution structure of bacillus subtilis blap biotinylated-2 form (energy minimized mean structure) 43 d1dcza_ not modelled 76.2 17 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 44 c2l5tA_ not modelled 74.5 22 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase; PDBTitle: solution nmr structure of e2 lipoyl domain from thermoplasma2 acidophilum 45 c2q8iB_ not modelled 74.2 26 PDB header:transferase Chain: B: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase component of PDBTitle: pyruvate dehydrogenase kinase isoform 3 in complex with antitumor drug2 radicicol 46 c4dk0A_ not modelled 73.5 35 PDB header:membrane protein Chain: A: PDB Molecule:putative maca; PDBTitle: crystal structure of maca from actinobacillus actinomycetemcomitans 47 d1qjoa_ not modelled 72.8 34 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 48 c2dsjA_ not modelled 72.1 24 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8 49 d1uoua3 not modelled 71.5 19 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 50 c3n6rK_ not modelled 70.8 19 PDB header:ligase Chain: K: PDB Molecule:propionyl-coa carboxylase, alpha subunit; PDBTitle: crystal structure of the holoenzyme of propionyl-coa carboxylase (pcc) 51 d1y8ob1 not modelled 69.7 26 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 52 d1e0ga_ not modelled 68.3 7 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 53 d1laba_ not modelled 67.9 14 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 54 d2pnrc1 not modelled 67.0 26 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 55 c2dneA_ not modelled 65.1 35 PDB header:transferase Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: solution structure of rsgi ruh-058, a lipoyl domain of2 human 2-oxoacid dehydrogenase 56 c2xhaB_ not modelled 64.8 21 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of domain 2 of thermotoga maritima n-utilization2 substance g (nusg) 57 d2tpta3 not modelled 64.7 21 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 58 c3fmcC_ not modelled 64.3 17 PDB header:hydrolase Chain: C: PDB Molecule:putative succinylglutamate desuccinylase / aspartoacylase; PDBTitle: crystal structure of a putative succinylglutamate desuccinylase /2 aspartoacylase family protein (sama_0604) from shewanella amazonensis3 sb2b at 1.80 a resolution 59 c2jkuA_ not modelled 64.1 26 PDB header:ligase Chain: A: PDB Molecule:propionyl-coa carboxylase alpha chain, PDBTitle: crystal structure of the n-terminal region of the biotin2 acceptor domain of human propionyl-coa carboxylase 60 c2qj8B_ not modelled 63.9 29 PDB header:hydrolase Chain: B: PDB Molecule:mlr6093 protein; PDBTitle: crystal structure of an aspartoacylase family protein (mlr6093) from2 mesorhizobium loti maff303099 at 2.00 a resolution 61 c2dncA_ not modelled 63.8 22 PDB header:transferase Chain: A: PDB Molecule:pyruvate dehydrogenase protein x component; PDBTitle: solution structure of rsgi ruh-054, a lipoyl domain from2 human 2-oxoacid dehydrogenase 62 d1gjxa_ not modelled 63.3 24 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 63 c3h9iB_ not modelled 62.4 22 PDB header:transport protein Chain: B: PDB Molecule:cation efflux system protein cusb; PDBTitle: crystal structure of the membrane fusion protein cusb from escherichia2 coli 64 d1y7ma2 not modelled 61.3 7 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 65 d1hcza2 not modelled 61.2 17 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain 66 d1k8ma_ not modelled 59.6 10 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 67 c2aujD_ not modelled 59.6 14 PDB header:transferase Chain: D: PDB Molecule:dna-directed rna polymerase beta' chain; PDBTitle: structure of thermus aquaticus rna polymerase beta'-subunit2 insert 68 c3va7A_ not modelled 59.4 26 PDB header:ligase Chain: A: PDB Molecule:klla0e08119p; PDBTitle: crystal structure of the kluyveromyces lactis urea carboxylase 69 c3na6A_ not modelled 58.1 30 PDB header:hydrolase Chain: A: PDB Molecule:succinylglutamate desuccinylase/aspartoacylase; PDBTitle: crystal structure of a succinylglutamate desuccinylase (tm1040_2694)2 from silicibacter sp. tm1040 at 2.00 a resolution 70 d1ghja_ not modelled 54.8 14 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 71 d1pmra_ not modelled 54.7 8 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 72 c3cdxB_ not modelled 54.4 24 PDB header:hydrolase Chain: B: PDB Molecule:succinylglutamatedesuccinylase/aspartoacylase; PDBTitle: crystal structure of2 succinylglutamatedesuccinylase/aspartoacylase from3 rhodobacter sphaeroides 73 c3t51C_ not modelled 49.0 22 PDB header:transport protein Chain: C: PDB Molecule:cation efflux system protein cusb; PDBTitle: crystal structures of the pre-extrusion and extrusion states of the2 cusba adaptor-transporter complex 74 c3ozxA_ not modelled 47.4 15 PDB header:hydrolase, translation Chain: A: PDB Molecule:rnase l inhibitor; PDBTitle: crystal structure of abce1 of sulfolubus solfataricus (-fes domain) 75 d1v8qa_ not modelled 46.9 24 Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:Ribosomal L27 protein 76 d1iyua_ not modelled 46.3 20 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 77 d2zjrt1 not modelled 46.1 28 Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:Ribosomal L27 protein 78 c2kw8A_ not modelled 45.6 19 PDB header:protein binding Chain: A: PDB Molecule:lpxtg-site transpeptidase family protein; PDBTitle: solution structure of bacillus anthracis sortase a (srta)2 transpeptidase 79 d1vf5c2 not modelled 44.1 28 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain 80 c3fin0_ not modelled 43.7 24 PDB header:ribosome Chain: 0: PDB Molecule:50s ribosomal protein l27; PDBTitle: t. thermophilus 70s ribosome in complex with mrna, trnas and ef-2 tu.gdp.kirromycin ternary complex, fitted to a 6.4 a cryo-em map.3 this file contains the 50s subunit. 81 c3h5qA_ not modelled 42.7 33 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase; PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus 82 c1brwB_ not modelled 42.4 32 PDB header:transferase Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase); PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation 83 c2j0fC_ not modelled 41.2 21 PDB header:transferase Chain: C: PDB Molecule:thymidine phosphorylase; PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design 84 c2xhcA_ not modelled 40.6 21 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) 85 c1otpA_ not modelled 40.0 22 PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase 86 c2x5cB_ not modelled 39.8 17 PDB header:viral protein Chain: B: PDB Molecule:hypothetical protein orf131; PDBTitle: crystal structure of hypothetical protein orf131 from2 pyrobaculum spherical virus 87 c2ftcO_ not modelled 36.5 24 PDB header:ribosome Chain: O: PDB Molecule:mitochondrial 39s ribosomal protein l27; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 88 c4ebzA_ not modelled 34.3 12 PDB header:transferase Chain: A: PDB Molecule:chitin elicitor receptor kinase 1; PDBTitle: crystal structure of the ectodomain of a receptor like kinase 89 c2w1kB_ not modelled 33.6 18 PDB header:transferase Chain: B: PDB Molecule:putative sortase; PDBTitle: crystal structure of sortase c-3 (srtc-3) from2 streptococcus pneumoniae 90 d1o4ua2 not modelled 32.3 16 Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:NadC N-terminal domain-like 91 c3ilaG_ not modelled 31.0 24 PDB header:signaling protein Chain: G: PDB Molecule:ryanodine receptor 1; PDBTitle: crystal structure of rabbit ryanodine receptor 1 n-terminal domain (9-2 205) 92 c3camB_ not modelled 29.5 23 PDB header:gene regulation Chain: B: PDB Molecule:cold-shock domain family protein; PDBTitle: crystal structure of the cold shock domain protein from neisseria2 meningitidis 93 c3n7xA_ not modelled 28.7 20 PDB header:virus Chain: A: PDB Molecule:capsid protein; PDBTitle: crystal structure of penaeus stylirostris densovirus capsid 94 c3bboX_ not modelled 28.6 28 PDB header:ribosome Chain: X: PDB Molecule:ribosomal protein l27; PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome 95 d2gycu1 not modelled 27.5 21 Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:Ribosomal L27 protein 96 c3o0pA_ not modelled 26.6 22 PDB header:transferase , hydrolase Chain: A: PDB Molecule:sortase family protein; PDBTitle: pilus-related sortase c of group b streptococcus 97 d1qapa2 not modelled 24.6 21 Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:NadC N-terminal domain-like 98 c2vbcA_ not modelled 24.3 20 PDB header:hydrolase Chain: A: PDB Molecule:dengue 4 ns3 full-length protein; PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus 99 c2qf7A_ not modelled 23.0 19 PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase protein; PDBTitle: crystal structure of a complete multifunctional pyruvate carboxylase2 from rhizobium etli 100 c2boyC_ not modelled 22.5 24 PDB header:oxidoreductase Chain: C: PDB Molecule:3-chlorocatechol 1,2-dioxygenase; PDBTitle: crystal structure of 3-chlorocatechol 1,2-dioxygenase from2 rhodococcus opacus 1cp 101 d1k8ga2 not modelled 21.1 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 102 c3howC_ not modelled 20.7 16 PDB header:transcription,transferase/dna/rna hybrid Chain: C: PDB Molecule:dna-directed rna polymerase ii subunit rpb3; PDBTitle: complete rna polymerase ii elongation complex iii with a t-u2 mismatch and a frayed rna 3'-uridine