Job Description O33599 Confidence 100.00% Date Tue Jul 17 17:05:02 BST 2012 Rank 1 Aligned Residues 261 % Identity 18% Template c2gu1A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:zinc peptidase; PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.					.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																	.	.																				.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.																				.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	T	Y	Y	T	I	D	S	N	G	D	Y	H	H	T	.	.	P	D	G	N	W	N	Q	A	M	F	D	N	K	E	Y	S	Y	T	F	.	.	.	.	V	D	A	Q	G	H	T	H	Y	F	Y	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																	.	.																				.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.																				.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	H	Y	M	V	K	V	G	D	T	L	S	G	I	F	A	Q	L	G	V	P	Y	S	I	L	Q	K	I	L	S	V	D	L	D	H	L	Q	L	D	M	I	Q	P	G	E	E	L	E	L	M	M	D	D	M	G	Q	L	S	R	L	I	Y	H	M	S	I	V	E	K	A	I	Y	T	R	E	N	D	G	S
Template Known Secondary structure									T	T										T	T													G	G	G	T			G	G	G			T	T									T	T	S											T	T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
																					94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	Y	P	K	N	A	N	A	N	G	S	G	Q	T	Y	V	N	P	A	T	A	G	D	N	N	D	Y	T	A	S	Q	S	Q	Q	H	I	N	Q	Y	G	Y	Q	S	N	V	G	P	D	A	S	Y	Y	S	H	S	N	N	N	Q	A	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	S	Y	D	F	Q	E	I	S	G	E	W	R	E	I	L	F	S	G	E	I	N	G	S	F	S	V	S	A	R	R	V	G	L	T	S	S	Q	V	A	N	I	T	Q	V	M	K	D	K	I	D	F	S	R	S	L	R	A	D	R	F	D	I	L	V	K	Q	Q	Y	L	G	E	H	N	T	G	N	S	E	I
Template Known Secondary structure																						S	S	S									T	T														T	T	T			T	T	T																	T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.	.	.							.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																												.	.	.										.	.	.	.	.	.
Query SS confidence																																												.	.	.										.	.	.	.	.	.
Query Sequence		N	S	H	D	G	N	G	K	V	N	Y	P	N	G	T	S	N	Q	N	G	G	S	A	S	K	A	T	A	S	G	H	A	K	D	A	S	W	L	T	S	R	K	.	.	.	Q	L	Q	P	Y	G	Q	Y	H	.	.	.	.	.	.	G	G	G	A	H	Y	G	V	D	Y	A	M	P	E	N	S	P	V	Y	S
Query Conservation																																												.	.	.										.	.	.	.	.	.
Alig confidence																																												.	.	.										.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	I	S	F	K	L	A	K	G	D	V	S	A	F	L	A	E	D	G	R	F	Y	D	R	A	G	N	S	L	E	R	A	F	N	R	Y	P	V	D	K	A	Y	R	Q	I	T	S	G	F	N	P	K	R	K	H	P	V	T	G	R	V	V	P	H	N	G	T	D	F	A	T	P	I	G	A	P	V	Y	S
Template Known Secondary structure									T	T									T	T	S					T	T	S		B	S	S					S		S	S		G	G	G								B	T	T		B		T	T	T			B			B		S							T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	D	G	T	V	V	Q	A	G	W	S	N	Y	G	G	G	N	Q	V	T	I	K	E	A	N	S	N	N	Y	Q	W	Y	M	H	N	N	R	L	T	V	S	A	G	D	K	V	K	A	G	D	Q	I	A	Y	S	G	S	T	G	N	S	T	A	P	H	V	H	F	Q	R	M	S	G	G	I	G	N	Q	Y
Query Conservation
Alig confidence													.																.																																																.	.	.	.
Template Conservation													.																.																																																.	.	.	.
Template Sequence		T	G	D	G	K	V	I	V	V	R	K	.	H	P	Y	A	G	N	Y	L	V	I	E	H	N	S	V	.	Y	K	T	R	Y	L	H	L	D	K	I	L	V	K	K	G	Q	L	V	K	R	G	Q	K	I	A	L	A	G	A	T	G	R	L	T	G	P	H	L	H	F	E	V	L	V	R	N	.	.	.	.	R
Template Known Secondary structure		S	S	S									.		T	T	T									S	S	S	.									S						T	T					T	T										S	S		S	S										T	T	.	.	.	.
Template Predicted Secondary structure													.																.																																																.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320					.
		306	.	.	.	310	.		.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		A	V	D	P	T	S	.	Y	L	Q
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		P	V	D	A	M	K	A	D	L	P
Template Known Secondary structure					T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions