Job Description O06446 Confidence 99.51% Date Tue Jul 17 17:05:02 BST 2012 Rank 63 Aligned Residues 185 % Identity 23% Template c3ly5A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase ddx18; PDBTitle: ddx18 dead-domain Resolution 2.80 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.								.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																														.	.																				.	.	.	.	.	.	.
Query SS confidence																														.	.																				.	.	.	.	.	.	.
Query Sequence		V	R	E	G	S	K	R	V	F	N	M	T	P	Y	K	V	Q	I	M	G	G	I	A	I	H	K	G	D	.	.	I	A	E	M	R	T	G	E	G	K	T	L	T	A	T	M	P	T	Y	.	.	.	.	.	.	.	L	N	A	L	A	G	R	G	V	H	V	I	T	V	N	E	Y	L	S	S	V	Q	S	E
Query Conservation																														.	.																				.	.	.	.	.	.	.
Alig confidence																														.	.																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	K	A	I	K	E	M	G	F	T	N	M	T	E	I	Q	H	K	S	I	R	P	L	L	E	G	R	D	L	L	A	A	A	K	T	G	S	G	K	T	L	A	F	L	I	P	A	V	E	L	I	V	K	L	R	F	M	P	R	N	G	T	G	V	L	I	L	S	P	T	R	E	L	A	M	Q	T	F	G
Template Known Secondary structure									T	T			B															T									T	T	S																	T	T			G	G	G									S	S
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		E	M	A	E	L	Y	N	F	L	G	L	T	V	G	L	N	L	N	S	K	T	T	E	E	K	R	E	A	.	.	Y	A	Q	D	I	T	Y	S	T	N	N	E	L	G	F	D	Y	L	R	D	N	M	V	N	Y	S	E	D	R	V	M	R	P	L	H	F	A	I	I	D	E	V	D	S	I	L	I	D	E	A
Query Conservation																														.	.
Alig confidence																														.	.														.												.	.	.	.	.																	.	.	.	.
Template Conservation																																													.												.	.	.	.	.																	.	.	.	.
Template Sequence		V	L	K	E	L	M	T	H	H	V	H	T	Y	G	L	I	M	G	G	S	N	R	S	A	E	A	Q	K	L	G	N	G	I	N	I	I	V	A	T	P	G	R	L	.	L	D	H	M	Q	N	T	P	G	F	M	.	.	.	.	.	Y	K	N	L	Q	C	L	V	I	D	E	A	D	R	I	L	.	.	.	.
Template Known Secondary structure							T	T	T			S							S	S	S														S										.								T	T			.	.	.	.	.		T	T								S						.	.	.	.
Template Predicted Secondary structure																																													.												.	.	.	.	.																	.	.	.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.						.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	P	L	I	I	S	G	E	A	E	K	S	T	S	L	Y	T	Q	A	N	V	F	A	K	M	L	K	Q	D	E	D	Y	K	Y	D	E	K	T	K	A	V	H	L	T	E	Q	G	A	D	K	A	E	R	M	F	K	V	E	N	L	Y
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	D	V	G	F	E	E	E	L	K	Q	I	I	K	L	L	P	T	R	R	Q	T	M	L	F	.	.	.	.	S	A	T	Q	T	R	K	V	E	D	L	A	R	I	S	L	K	K	E	P	L	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.		T	T												S		S	S	S						.	.	.	.		S	S														S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template SS confidence
														340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.					.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions