Job Description O06446 Confidence 99.41% Date Tue Jul 17 17:05:02 BST 2012 Rank 77 Aligned Residues 168 % Identity 25% Template c3iuyB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx53; PDBTitle: crystal structure of ddx53 dead-box domain Resolution 2.40 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																														.	.																								.
Query SS confidence																														.	.																								.
Query Sequence		V	R	E	G	S	K	R	V	F	N	M	T	P	Y	K	V	Q	I	M	G	G	I	A	I	H	K	G	D	.	.	I	A	E	M	R	T	G	E	G	K	T	L	T	A	T	M	P	T	Y	L	N	A	L	.	A	G	R	G	V	H	V	I	T	V	N	E	Y	L	S	S	V	Q	S	E	E	M	A	E	L	Y
Query Conservation																														.	.																								.
Alig confidence																														.	.																								.
Template Conservation
Template Sequence		L	L	K	S	I	I	R	V	G	I	L	K	P	T	P	I	Q	S	Q	A	W	P	I	I	L	Q	G	I	D	L	I	V	V	A	Q	T	G	T	G	K	T	L	S	Y	L	M	P	G	F	I	H	L	D	S	N	G	P	G	M	L	V	L	T	P	T	R	E	L	A	L	H	V	E	A	E	C	S	K	Y	S
Template Known Secondary structure										T			S														T	T									T	T	S															T					S						S	S
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	L	G	L	T	V	G	L	N	L	N	S	K	T	T	E	E	K	R	E	A	Y	A	Q	D	I	T	Y	S	T	N	N	E	L	G	F	D	Y	L	R	D	N	M	V	N	Y	S	E	D	R	V	M	R	P	L	H	F	A	I	I	D	E	V	D	S	I	L	I	D	E	A	R	T	P	L	I	I	S	G
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.														.											.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.														.											.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	K	G	L	K	S	I	C	I	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	V	D	I	I	I	A	T	P	G	R	L	.	N	D	L	Q	M	N	N	S	V	N	.	.	.	.	.	.	L	R	S	I	T	Y	L	V	I	D	E	A	D	K	M	L	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T							.	.	.	.	.	.	.	.	.	.	.	.	.				S										.						T	T		S		.	.	.	.	.	.		T	T														.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.														.											.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.														.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.							.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	E	K	S	T	S	L	Y	T	Q	A	N	V	F	A	K	M	L	K	Q	D	E	D	Y	K	Y	D	E	K	T	K	A	V	H	L	T	E	Q	G	A	D	K	A	E	R	M	F	K	V	E
Query Conservation
Alig confidence		.	.	.	.																								.	.	.	.
Template Conservation		.	.	.	.																								.	.	.	.
Template Sequence		.	.	.	.	D	M	E	F	E	P	Q	I	R	K	I	L	L	D	V	R	P	D	R	Q	T	V	M	.	.	.	.	T	S	A	T	W	P	D	T	V	R	Q	L	A	L	S	Y	L	K	D	P
Template Known Secondary structure		.	.	.	.		T	T												S		S	S						.	.	.	.			S	S														S	S
Template Predicted Secondary structure		.	.	.	.																								.	.	.	.
Template SS confidence
						392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.					.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions