Job Description O06446 Confidence 99.16% Date Tue Jul 17 17:05:02 BST 2012 Rank 106 Aligned Residues 136 % Identity 21% Template c3i32A_ PDB info PDB header:rna binding protein,hydrolase Chain: A: PDB Molecule:heat resistant rna dependent atpase; PDBTitle: dimeric structure of a hera helicase fragment including the c-terminal2 reca domain, the dimerization domain, and the rna binding domain Resolution 2.80 Å

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		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.			.	.	.	.	.
Predicted Secondary structure																																																																											.	.
Query SS confidence																																																																											.	.
Query Sequence		L	I	Y	I	S	Q	K	G	K	F	D	A	V	V	E	D	V	V	E	K	H	K	A	G	Q	P	V	L	L	G	T	V	A	V	E	T	S	E	Y	I	S	N	L	L	K	K	R	G	I	R	H	D	V	L	N	A	K	N	H	E	R	E	A	E	I	V	A	G	A	G	Q	K	G	.	.	A	V	T	I	A
Query Conservation																																																																											.	.
Alig confidence																				.	.																																																						.	.
Template Conservation																				.	.
Template Sequence		A	V	P	A	P	V	R	G	R	L	E	V	L	S	D	L	L	Y	.	.	V	A	S	P	D	R	A	M	V	F	T	R	T	K	A	E	T	E	E	I	A	Q	G	L	L	R	L	G	H	P	A	Q	A	L	H	G	D	M	S	Q	G	E	R	E	R	V	M	G	A	F	R	Q	G	E	V	R	V	L	V	A
Template Known Secondary structure							S	S	S											.	.					S	S						S	S													T	T	T								S				T													T	S
Template Predicted Secondary structure																				.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.		.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		T	N	M	A	G	R	G	T	D	I	K	L	G	E	G	V	E	E	L	G	G	L	.	A	V	I	G	T	E	R	H	E	S	R	R	I	D	D	Q	L	R	G	R	S	G	R	Q	G	D	K	G	D	S	R	F	Y	L	S	L	Q	D	E	L	M	I	R	F	G	S	E	R	L	Q	K	M	M	S	R	L	G
Query Conservation																								.
Alig confidence													.	.	.	.	.	.	.	.	.			.																								.	.	.	.	.											.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.																											.	.	.	.	.											.	.	.	.	.	.	.
Template Sequence		T	D	V	A	A	R	G	L	D	I	P	.	.	.	.	.	.	.	.	.	Q	V	D	L	V	V	H	Y	R	M	P	D	R	A	E	A	Y	Q	H	R	S	G	R	T	G	G	.	.	.	.	.	R	V	V	L	L	Y	G	P	R	E	.	.	.	.	.	.	.	R	R	D	V	E	A	L	E	R	A	V	G
Template Known Secondary structure			S	T	T	T		S	T	T			.	.	.	.	.	.	.	.	.			S					S	S			S	S	T	T							T					.	.	.	.	.								S	S	T	.	.	.	.	.	.	.												T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.																											.	.	.	.	.											.	.	.	.	.	.	.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.										.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.						.	.	.	.	.	.	.	.	340	.								.	.	.	.	.	.	.	.	350	.	.	.
		569	570
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		359	360

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions