Job Description O06446 Confidence 99.22% Date Tue Jul 17 17:05:02 BST 2012 Rank 101 Aligned Residues 185 % Identity 13% Template c3fhcB_ PDB info PDB header:transport protein/hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: crystal structure of human dbp5 in complex with nup214 Resolution 2.80 Å

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		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.				.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																														.	.			.	.																											.	.	.
Query SS confidence																														.	.			.	.																											.	.	.
Query Sequence		A	L	V	R	E	G	S	K	R	V	F	N	M	T	P	Y	K	V	Q	I	M	G	G	I	A	I	H	K	.	.	G	D	.	.	I	A	E	M	R	T	G	E	G	K	T	L	T	A	T	M	P	T	Y	L	N	A	L	A	G	R	.	.	.	G	V	H	V	I	T	V	N	E	Y	L	S	S	V	Q	S	E
Query Conservation																														.	.			.	.																											.	.	.
Alig confidence																														.	.			.	.																											.	.	.
Template Conservation
Template Sequence		P	Q	L	L	Q	G	V	Y	A	M	G	F	N	R	P	S	K	I	Q	E	N	A	L	P	L	M	L	A	E	P	P	Q	N	L	I	A	Q	S	Q	S	G	T	G	K	T	A	A	F	V	L	A	M	L	S	Q	V	E	P	A	N	K	Y	P	Q	C	L	C	L	S	P	T	Y	E	L	A	L	Q	T	G	K
Template Known Secondary structure											T	T			S														S	S	S											S																	T	T	S		S								S	S
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	A	E	L	Y	N	F	L	G	L	T	V	G	L	N	L	N	S	K	T	T	E	E	K	R	E	A	Y	A	Q	D	I	T	Y	S	T	N	N	E	L	G	F	D	Y	L	R	D	N	M	V	N	Y	S	E	D	R	V	M	R	P	L	H	F	A	I	I	D	E	V	D	S	I	L	I	D	E	A	R	T
Query Conservation
Alig confidence																																											.												.	.	.	.	.																				.	.	.
Template Conservation																																											.												.	.	.	.	.																				.	.	.
Template Sequence		V	I	E	Q	M	G	K	F	Y	P	E	L	K	L	A	Y	A	V	R	G	N	K	L	E	R	G	Q	K	I	S	E	Q	I	V	I	G	T	P	G	T	V	.	L	D	W	C	S	K	L	K	F	I	D	.	.	.	.	.	P	K	K	I	K	V	F	V	L	D	E	A	D	V	M	I	A	T	Q	.	.	.
Template Known Secondary structure							T	T	T		S	S							S	T	T					S	S						S										.							S					.	.	.	.	.	G	G	G													T	T	S	T	.	.	.
Template Predicted Secondary structure																																											.												.	.	.	.	.																				.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.						.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	I	I	S	G	E	A	E	K	S	T	S	L	Y	T	Q	A	N	V	F	A	K	M	L	K	Q	D	E	D	Y	K	Y	D	E	K	T	K	A	V	H	L	T	E	Q	G	A	D	K	A	E	R	M	F	K	V	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	G	H	Q	D	Q	S	I	R	I	Q	R	M	L	P	R	N	C	Q	M	L	L	F	.	.	.	.	S	A	T	F	E	D	S	V	W	K	F	A	Q	K	V	V	P	D	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	T												S		T	T	S						.	.	.	.		S														S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Template SS confidence
														252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.					.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions