Job Description O06446 Confidence 91.56% Date Tue Jul 17 17:05:02 BST 2012 Rank 169 Aligned Residues 68 % Identity 26% Template c3crqA_ PDB info PDB header:transferase Chain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel Resolution 2.20 Å

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		373	.	.	.	.	.	.	380	.	.		.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.												.	400	.	.	.	.	.	.												.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.																	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.																	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	G	M	T	G	T	A	K	T	.	E	E	E	E	F	R	N	I	Y	N	M	T	V	T	Q	I	.	.	.	.	.	.	.	.	.	.	.	P	T	N	K	P	V	Q	R	.	.	.	.	.	.	.	.	.	.	.	N	D	K	S	D	L	I	Y	I	S	Q	K	G	K	F	D	A	V	V	E	D	V	V
Query Conservation												.																	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.																	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation																																																																			.
Template Sequence		L	M	G	P	T	A	A	G	K	T	D	L	A	M	A	L	A	D	A	L	P	C	E	L	I	S	V	D	S	A	L	I	Y	R	G	M	D	I	G	T	A	K	P	S	R	E	L	L	A	R	Y	P	H	R	L	I	D	I	R	D	P	A	E	S	Y	.	S	A	A	E	F	R	A	D	A	L	A	A	M	A
Template Known Secondary structure					S	T	T	S	S										T	T	S									T	T	T	T	B	T	T			T	T	T	T										S				S	S	S		B		T	T	S			.
Template Predicted Secondary structure																																																																			.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.
		430	.	.	.	.	.	.		.	.	.	440	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		E	K	H	K	A	G	Q	.	P	V	L	L	G
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		K	A	T	A	R	G	R	I	P	L	L	V	G
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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