Job Description O06446 Confidence 99.45% Date Tue Jul 17 17:05:02 BST 2012 Rank 71 Aligned Residues 149 % Identity 19% Template c2yjtD_ PDB info PDB header:hydrolase inhibitor/hydrolase Chain: D: PDB Molecule:atp-dependent rna helicase srmb; PDBTitle: crystal structure of e. coli dead-box protein srmb bound to2 regulator of ribonuclease activity a (rraa) Resolution 2.90 Å

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		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	V	Q	R	N	D	K	S	D	L	I	Y	I	S	Q	K	G	K	F	D	A	V	V	E	D	V	V	E	K	H	K	A	G	Q	P	V	L	L	G	T	V	A	V	E	T	S	E	Y	I	S	N	L	L	K	K	R	G	I	R	H	D	V	L	N	A	K	N	H	E	R	E	A	E	I	V	A	G	A	G
Query Conservation
Alig confidence										.	.																				.	.
Template Conservation										.	.																				.	.
Template Sequence		R	K	K	I	H	Q	W	Y	.	.	Y	R	A	D	D	L	E	H	K	T	A	L	L	V	H	L	L	K	Q	.	.	P	E	A	T	R	S	I	V	F	V	R	K	R	E	R	V	H	E	L	A	N	W	L	R	E	A	G	I	N	N	C	Y	L	E	G	E	M	V	Q	G	K	R	N	E	A	I	K	R	L
Template Known Secondary structure										.	.				S	S													S	S	.	.	T	T			S						S	S	S																						T	T	S
Template Predicted Secondary structure										.	.																				.	.
Template SS confidence
		219	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		482	.	.			.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.		.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.																												.
Query SS confidence					.	.																												.
Query Sequence		Q	K	G	.	.	A	V	T	I	A	T	N	M	A	G	R	G	T	D	I	K	L	G	E	G	V	E	E	L	G	G	L	.	A	V	I	G	T	E	R	H	E	S	R	R	I	D	D	Q	L	R	G	R	S	G	R	Q	G	D	K	G	D	S	R	F	Y	L	S	L	Q	D	E	L	M	I	R	F	G	S	E
Query Conservation					.	.																												.
Alig confidence					.	.																	.	.	.	.	.	.	.	.	.			.																																							.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.
Template Sequence		T	E	G	R	V	N	V	L	V	A	T	D	V	A	A	R	G	I	D	I	P	.	.	.	.	.	.	.	.	.	D	V	S	H	V	F	N	F	D	M	P	R	S	G	D	T	Y	L	H	R	I	G	R	T	A	R	A	G	R	K	G	T	A	I	S	L	V	E	A	H	D	.	.	.	.	.	.	.	H	L
Template Known Secondary structure		S	S	T	T								T	G	G	G	S	S					.	.	.	.	.	.	.	.	.	S							S	S			S									G	G	G	S			S	S	S										G	G	G	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.										.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.								.	.
		559	560	.	.	.	.	.	.	.	.	.	570
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	Q	K	M	M	S	R	L	G	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	G	K	V	G	R	Y	I	E	E	P
Template Known Secondary structure										S	S	S
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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