Job Description O06446 Confidence 96.20% Date Tue Jul 17 17:05:02 BST 2012 Rank 147 Aligned Residues 200 % Identity 18% Template c2j7pA_ PDB info PDB header:signal recognition Chain: A: PDB Molecule:signal recognition particle protein; PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy Resolution 1.97 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	L	S	K	I	L	D	G	N	N	K	E	I	K	Q	L	G	K	L	A	D	K	V	I	A	L	E	E	K	T	A	I	L	T	D	E	E	I	R	N	K	T	K	Q	F	Q	T	E	L	A	D	I	D	N	V	K	K	Q	N	D	Y	L	D	K	I	L	P	E	A	Y	A	L	V	R	E	G	S	K	R
Query Conservation
Alig confidence																																.																						.	.	.	.	.
Template Conservation																																.																						.	.	.	.	.
Template Sequence		E	A	I	G	R	L	R	G	R	G	R	I	T	E	E	D	L	K	A	T	L	R	E	I	R	R	A	L	M	D	.	A	D	V	N	L	E	V	A	R	D	F	V	E	R	V	R	E	E	A	L	G	.	.	.	.	.	K	Q	V	L	E	S	L	T	P	A	E	V	I	L	A	T	V	Y	E	A	L	K	E
Template Known Secondary structure						T	T	T	T	S		S																				.	T	T																				.	.	.	.	.	T	T	T	T	T		S
Template Predicted Secondary structure																																.																						.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.						.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		82	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		V	F	N	M	.	T	P	Y	K	V	Q	I	M	G	G	I	A	I	H	K	G	D	I	A	E	M	R	T	G	E	G	K	T	L	T	A	T	M	P	T	Y	L	N	A	L	A	G	R	G	V	H	V	I	T	V	N	E	Y	L	S	S	V	Q	S	E	E	M	A	E	L	Y	N	F	L	G	L	T	V	G	L
Query Conservation						.
Alig confidence						.																		.	.	.	.	.																																			.
Template Conservation																								.	.	.	.	.																																			.
Template Sequence		A	L	G	G	E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	.	.	.	.	.	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	.	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E
Template Known Secondary structure			T	T	S	S								S	S								S	.	.	.	.	.	T	T	S	S														T	T	T											S	S	T	T	.													T
Template Predicted Secondary structure																								.	.	.	.	.																																			.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.						.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.								.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.						.
Query SS confidence														.	.	.	.	.	.	.						.
Query Sequence		N	L	N	S	K	T	T	E	E	K	R	E	.	.	.	.	.	.	.	A	Y	A	Q	D	.	I	T	Y	S	T	N	N	E	L	G	F	D	Y	L	R	D	N	M	V	N	Y	S	E	D	R	V	M	R	P	L	H	F	A	I	I	D
Query Conservation														.	.	.	.	.	.	.						.
Alig confidence														.	.	.	.	.	.	.						.
Template Conservation
Template Sequence		V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D
Template Known Secondary structure				T	T																	T	T													T	T																		S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions