Job Description O06446 Confidence 89.40% Date Tue Jul 17 17:05:02 BST 2012 Rank 174 Aligned Residues 342 % Identity 12% Template c2is6B_ PDB info PDB header:hydrolase/dna Chain: B: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of uvrd-dna-adpmgf3 ternary complex Resolution 2.20 Å

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.
Query SS confidence																																								.	.	.	.
Query Sequence		Q	I	M	G	G	I	A	I	H	K	G	D	I	A	E	M	R	T	G	E	G	K	T	L	T	A	T	M	P	T	Y	L	N	A	L	A	G	R	.	.	.	.	G	V	H	V	I	T	V	N	E	Y	L	S	S	V	Q	S	E	E	M	A	E	L	Y	N	F	L	G	L	T	V	G	L	N	L	N	S	K	T
Query Conservation																																								.	.	.	.
Alig confidence																																								.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	R	E	A	V	A	A	P	R	S	N	L	L	V	L	A	G	A	G	S	G	K	T	R	V	L	V	H	R	I	A	W	L	M	S	V	E	N	C	S	P	Y	S	I	M	A	V	T	F	T	N	K	A	A	A	E	M	R	H	R	I	G	Q	L	M	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T			S	S								T	T	S	S															T	S				G	G	G						S	S																T	T	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		T	E	E	K	R	E	A	Y	A	Q	D	I	T	Y	S	T	N	N	E	L	G	F	D	Y	L	R	D	N	M	V	N	Y	S	E	D	R	V	M	R	P	L	H	F	A	I	I	D	E	V	D	S	.	I	L	I	D	E	A	R	T	P	L	I	I	S	G	E	A	E	K	S	T	S	L	Y	T	Q	A	N	V
Query Conservation																																																					.
Alig confidence		.	.	.	.	.	.	.																										.	.	.	.	.															.
Template Conservation		.	.	.	.	.	.	.																										.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	S	Q	G	G	M	W	V	G	T	F	H	G	L	A	H	R	L	L	R	A	H	H	M	D	A	.	.	.	.	.	N	L	P	Q	D	F	Q	I	L	D	S	E	D	Q	L	R	L	L	K	R	L	I	K	A	M	N	L	D	E	K	Q	W	P	P	R	Q	A	M	W	Y	I	N	S
Template Known Secondary structure		.	.	.	.	.	.	.	T	T	T	T																	T					.	.	.	.	.	T			T	T																				T	T			T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.																										.	.	.	.	.
Template SS confidence
									81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.						.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		F	A	K	M	L	K	Q	D	E	D	Y	K	Y	D	E	K	T	K	A	V	H	L	T	E	Q	G	A	D	K	A	E	R	M	F	K	V	E	N	L	Y	D	V	Q	N	V	D	V	I	S	H	I	N	T	A	L	R	A	H	V	T	L	Q	R	D	V	D	Y	M	V	V	D	G	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.																																		.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.
Template Sequence		Q	K	D	E	G	L	R	P	H	H	I	N	P	V	E	Q	T	W	Q	K	V	Y	Q	A	Y	Q	E	A	C	D	R	A	G	L	V	D	.	.	.	F	A	E	L	L	L	R	A	H	E	L	W	L	N	K	P	H	I	L	Q	H	Y	R	E	R	F	T	N	I	L	V	D	E	F	Q	D	T	N	N	I	Q
Template Known Secondary structure					T	T			S																									T				.	.	.																																S	S	G	G	G
Template Predicted Secondary structure																																						.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
															318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	L	I	V	D	Q	F	T	G	R	T	M	P	G	R	R	F	S	E	G	L	H	Q	A	I	E	A	K	E	G	V	Q	I	Q	N	E	S	K	T	M	A	S	I	T	F	Q	N	Y	F	R	M	Y	N	K	L	A	G	M	T	G	T	A	K	T	E	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	A	W	I	R	L	L	A	G	D	T	G	K	V	M	I	V	G	D	D	D	Q	S	I	Y	G	W	R	G	A	Q	V	E	N	I	Q	R	F	L	N	D	F	P	G	A	E	T	I	R	L	E	Q	N	Y	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	N	I	L	S	A	A
Template Known Secondary structure										T	T	T									G	G	G				G	G	G	T			T										S	T	T								B			S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.																	.	.	.	.	290	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.				.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		E	E	F	R	N	I	Y	N	M	T	V	T	Q	I	P	T	N	K	P	V	Q	R	N	D	K	S	D	L	I	Y	I	S	Q	K	G	K	F	D	A	V	V	E	D	V	V	E	K	H	K	A	G	Q	P	.	.	.	V	L	L	G	T	V	A	V	E	T	S	E	Y	I	S	N	L	L	K	K	R	G	I	R
Query Conservation																																																							.	.	.
Alig confidence																																																							.	.	.
Template Conservation
Template Sequence		N	A	L	I	E	N	N	N	G	R	L	G	K	K	L	W	T	D	G	A	D	G	E	P	I	S	L	Y	C	A	F	N	E	L	D	E	A	R	F	V	V	N	R	I	K	T	W	Q	D	N	G	G	A	L	A	E	C	A	I	L	Y	R	S	N	A	Q	S	R	V	L	E	E	A	L	L	Q	A	S	M	P
Template Known Secondary structure						T	T	S	T	T							B		S	S				S								S	S																		T	T			G	G	G						S	S	G	G	G											T	T
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	V	L	N	A	K	N	H	E	R	E	A	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	R	I	Y	G	G	M	R	F	F	E	R	Q	E	I
Template Known Secondary structure						S	S	S		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions