Job Description O06446 Confidence 100.00% Date Tue Jul 17 17:05:02 BST 2012 Rank 8 Aligned Residues 645 % Identity 48% Template c2fsgA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: complex seca:atp from escherichia coli Resolution 2.20 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	I	K	Q	L	G	K	L	A	D	K	V	I	A	L	E	E	K	T	A	I	L	T	D	E	E	I	R	N	K	T	K	Q	F	Q	T	E	L	A	D	I	D	N	V	K	K	Q	N	D	Y	L	D	K	I	L	P	E	A	Y	A	L	V	R	E	G	S	K	R	V	F	N	M	T	P	Y	K	V	Q	I
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.
Template Sequence		R	T	L	R	R	X	R	K	V	V	N	I	I	N	A	X	E	P	E	X	E	K	L	S	D	E	E	L	K	G	K	T	A	E	F	R	A	R	L	.	.	.	.	.	.	.	E	K	G	E	V	L	E	N	L	I	P	E	A	F	A	V	V	R	E	A	S	K	R	V	F	G	X	R	H	F	D	V	Q	L
Template Known Secondary structure																	T							S																	.	.	.	.	.	.	.		T	T			G	G	G	G																	S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.								.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	G	I	A	I	H	K	G	D	I	A	E	M	R	T	G	E	G	K	T	L	T	A	T	M	P	T	Y	L	N	A	L	A	G	R	G	V	H	V	I	T	V	N	E	Y	L	S	S	V	Q	S	E	E	M	A	E	L	Y	N	F	L	G	L	T	V	G	L	N	L	N	S	K	T	T	E	E	K	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	G	X	V	L	N	E	R	C	I	A	E	X	R	T	G	E	G	K	T	L	T	A	T	L	P	A	Y	L	N	A	L	T	G	K	G	V	H	V	V	T	V	N	D	Y	L	A	Q	R	D	A	E	N	N	R	P	L	F	E	F	L	G	L	T	V	G	I	N	L	P	G	X	P	A	P	A	K	R	E
Template Known Secondary structure							T	T	S	S							T	T	S						T									T	T	S	S							S	S																		T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	A	Q	D	I	T	Y	S	T	N	N	E	L	G	F	D	Y	L	R	D	N	M	V	N	Y	S	E	D	R	V	M	R	P	L	H	F	A	I	I	D	E	V	D	S	I	L	I	D	E	A	R	T	P	L	I	I	S	G	E	A	E	K	S	T	S	L	Y	T	Q	A	N	V	F	A	K	M	L	K	Q
Query Conservation
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Y	A	A	D	I	T	Y	G	T	N	N	E	Y	G	F	D	Y	L	R	D	N	X	A	F	S	P	E	E	R	V	Q	R	K	L	H	Y	A	L	V	D	E	V	D	S	I	L	I	D	E	A	R	T	P	L	I	I	S	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S	S																	T	T		S	S	G	G	G												S						T	T	T	T	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	D	Y	K	Y	D	E	K	T	K	A	V	H	L	T	E	Q	G	A	D	K	A	E	R	M	F	K	V	E	N	L	Y	D	V	Q	N	V	D	V	I	S	H	I	N	T	A	L	R	A	H	V	T	L	Q	R	D	V	D	Y	M	V	V	D	G	E	V	L	I	V	D	Q	F	T	G	R	T	M	P	G
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	F	S	E	G	L	H	Q	A	I	E	A	K	E	G	V	Q	I	Q	N	E	S	K	T	M	A	S	I	T	F	Q	N	Y	F	R	M	Y	N	K	L	A	G	M	T	G	T	A	K	T	E	E	E	E	F	R	N	I	Y	N	M	T	V	T	Q	I	P	T	N	K	P	V	Q	R	N	D	K	S	D	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Q	T	L	A	S	I	T	F	Q	N	Y	F	R	L	Y	E	K	L	A	G	X	T	G	T	A	D	T	E	A	F	E	F	S	S	I	Y	K	L	D	T	V	V	V	P	T	N	R	P	X	I	R	K	D	L	P	D	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T	S	S								S																						S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																								369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	I	S	Q	K	G	K	F	D	A	V	V	E	D	V	V	E	K	H	K	A	G	Q	P	V	L	L	G	T	V	A	V	E	T	S	E	Y	I	S	N	L	L	K	K	R	G	I	R	H	D	V	L	N	A	K	N	H	E	R	E	A	E	I	V	A	G	A	G	Q	K	G	A	V	T	I	A	T	N	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Y	X	T	E	A	E	K	I	Q	A	I	I	E	D	I	K	E	R	T	A	K	G	Q	P	V	L	V	G	T	I	S	I	E	K	S	E	L	V	S	N	E	L	T	K	A	G	I	K	H	N	V	L	N	A	K	F	H	A	N	E	A	A	I	V	A	Q	A	G	Y	P	A	A	V	T	I	A	T	N	X
Template Known Secondary structure				S	S																		T	T								S	S														T	T								T	T											T	T	T	S	T	T							S
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
		493	.	.	.	.	.	.	500	.	.																														.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	R	G	T	D	I	K	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	V	E	E	L	G	G	L	A	V	I	G	T	E	R	H	E	S	R	R	I	D	D	Q	L	R	G	R	S	G	R	Q	G	D	K	G	D	S	R	F
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	R	G	T	D	I	V	L	G	G	S	W	Q	A	E	V	A	A	L	E	N	P	T	A	E	Q	I	E	K	I	K	A	D	W	Q	V	R	H	D	A	V	L	E	A	G	G	L	H	I	I	G	T	E	R	H	E	S	R	R	I	D	N	Q	L	R	G	R	S	G	R	Q	G	D	A	G	S	S	R	F
Template Known Secondary structure			T	T						T	T			S					T	T		S	S			T																				T	T	S						S	S			S	S									T	T	S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.
		544	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	S	L	Q	D	E	L	M	I	R	F	G	S	E	R	L	Q	K	M	M	S	R	L	G	L	D	D	S	T	P	I	E	S	K	M	V	S	R	A	V	E	S	A	Q	K	R	V	E	G	N	N	F	D	A	R	K	R	I	L	E	Y	D	E	V	L	R	K	Q	R	E	I	I	Y	N	E	R	N	S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	S	X	E	D	A	L	X	R	I	F	A	S	D	R	V	S	G	X	X	R	K	L	G	X	K	P	G	E	A	I	E	H	P	W	V	T	K	A	I	A	N	A	Q	R	K	V	E	S	R	N	F	D	I	R	K	Q	L	L	E	Y	D	D	V	A	N	D	Q	R	R	A	I	Y	S	Q	R	N	E	L
Template Known Secondary structure					T	T	S	G	G	G	G	G	G	S						T	T	G	G	G	G				T	T
Template Predicted Secondary structure
Template SS confidence
		587	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.
		624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.			.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.			.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.																									.	.
Query SS confidence																																.	.																									.	.
Query Sequence		I	D	E	E	D	S	S	Q	V	V	D	A	M	L	R	S	T	L	Q	R	S	I	N	Y	Y	I	N	T	A	D	.	.	D	E	P	E	Y	Q	P	F	I	D	Y	I	N	D	I	F	L	Q	E	G	D	I	T	E	.	.	D	D	I	K	G	K	D	A	E	D	I	F	E	V	V	W	A	K	I	E	A	A
Query Conservation																																.	.																									.	.
Alig confidence																																.	.																									.	.
Template Conservation
Template Sequence		L	D	V	S	D	V	S	E	T	I	N	S	I	R	E	D	V	F	K	A	T	I	D	A	Y	I	P	P	Q	S	L	E	E	X	W	D	I	P	G	L	Q	E	R	L	K	N	D	F	D	L	D	L	P	I	A	E	W	L	D	K	E	P	E	L	H	E	E	T	L	R	E	R	I	L	A	Q	S	I	E	V
Template Known Secondary structure			T		S																				T	T	S		T	T			G	G	G																												S	S
Template Predicted Secondary structure
Template SS confidence
		667	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.
		700	.	.	.	.	.		.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		Y	Q	S	Q	K	D	.	I	L	E	E	Q	M	N	E	F	E	R	M	I	L	L	R	S	I	D	S	H	W	T	D	H	I	D	T	M	D	Q	L	R	Q	G	I	H	L	R	S	Y	A	Q	Q	N	P	L	R	D	Y	Q	N	E	G	H	E	L	F	D	I	M	M	Q	N	I	E	E	D	T	C	K	F	I
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		Y	Q	R	K	E	E	V	V	G	A	E	X	X	R	H	F	E	K	G	V	X	L	Q	T	L	D	S	L	W	K	E	H	L	A	A	X	D	Y	L	R	Q	G	I	H	L	R	G	Y	A	Q	K	D	P	K	Q	E	Y	K	R	E	S	F	S	X	F	A	A	X	L	E	S	L	K	Y	E	V	I	S	T	L
Template Known Secondary structure																																											T	T	T	T	S	S		S	S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		747	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.
		779	780	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	S	V	V	Q	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	K	V	Q	V	R	X	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		827	.	.	830	.	.	.	.