Job Description O06446 Confidence 99.45% Date Tue Jul 17 17:05:02 BST 2012 Rank 70 Aligned Residues 410 % Identity 15% Template c1z3iX_ PDB info PDB header:recombination/dna binding Chain: X: PDB Molecule:similar to rad54-like; PDBTitle: structure of the swi2/snf2 chromatin remodeling domain of eukaryotic2 rad54 Resolution 3.00 Å

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		88	.	90	.	.	.	.	.	.	.	.												.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.								.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.
Query Sequence		Y	K	V	Q	I	M	G	G	I	A	I	.	.	.	.	.	.	.	.	.	.	.	H	K	G	D	I	A	E	M	R	T	G	E	G	K	T	L	T	A	T	M	P	T	Y	L	N	A	L	A	G	.	.	.	.	.	.	.	R	G	V	H	V	I	T	V	N	E	Y	L	S	S	V	Q	S	E	E	M	A	E
Query Conservation													.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.														.	.	.	.
Template Conservation																																																																									.	.	.	.
Template Sequence		R	P	H	Q	R	E	G	V	K	F	L	W	D	C	V	T	G	R	R	I	E	N	S	Y	G	C	I	M	A	D	E	M	G	L	G	K	T	L	Q	C	I	T	L	I	W	T	L	L	K	Q	S	P	D	C	K	P	E	I	D	K	V	I	V	V	S	P	S	S	L	V	R	.	.	.	.	N	W	Y	N	E
Template Known Secondary structure																	T	T	S	S	S	T	T										T	T	S																		T	T	S	S		S		S													.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.					.	220	.	.	.
		150	.	.	.	.	.			.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.											.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure								.	.																			.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.																			.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Y	N	F	L	G	.	.	L	T	V	G	L	N	L	N	S	K	T	T	E	E	K	R	E	A	.	.	.	.	.	.	.	.	.	.	Y	A	Q	D	I	T	Y	S	T	N	N	E	L	G	F	D	Y	L	R	D	N	M	V	N	Y	S	E	D	R	V	M	R	P	L	H	F	A	I	I	D	E	V	D	S
Query Conservation								.	.																			.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.																			.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.
Template Sequence		V	G	K	W	L	G	G	R	V	Q	P	V	A	I	D	G	G	S	K	D	E	I	D	S	K	L	V	N	F	I	S	Q	Q	G	M	R	I	P	T	P	I	L	I	I	S	Y	E	T	F	.	.	.	.	.	.	.	.	.	R	L	H	A	E	V	L	H	K	G	K	V	G	L	V	I	C	D	E	G	H	R
Template Known Secondary structure							G	G	G								S	S																	S	S			S												.	.	.	.	.	.	.	.	.				T	T	T	T	T	T	S								T	T	G	G	G
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.										.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		218	.	220	.	.												.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.																.	.																																											.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.																.	.																																											.	.	.	.	.
Query Sequence		I	L	I	D	E	.	.	.	.	.	.	.	.	.	.	.	A	R	T	P	L	I	I	S	G	E	A	E	K	S	T	.	.	S	L	Y	T	Q	A	N	V	F	A	K	M	L	K	Q	D	E	D	Y	K	Y	D	E	K	T	K	A	V	H	L	T	E	Q	G	A	D	K	A	E	R	M	F	.	.	.	.	.
Query Conservation							.	.	.	.	.	.	.	.	.	.	.																.	.																																											.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.																.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	N	S	D	N	Q	T	Y	L	A	L	N	S	M	N	A	Q	R	R	V	L	I	S	G	T	P	I	Q	N	D	L	L	E	Y	F	S	L	V	H	F	V	N	S	G	I	L	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	E	F	K	K	R	F	E	I	P	I	L
Template Known Secondary structure				T	T														S							S	S		S	G	G	G	G	G	G																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.																			.	.	.	.	.	.	350	.	.	.	.	.	.
				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	K	V	E	N	L	Y	D	V	Q	N	V	D	V	I	S	H	I	N	T	A	L	R	A	H	V	T	L	Q	R	D	V	D	Y	M	V	V	D	G	E	V	L	I	V	D	Q	F	T	G	R	T	M	P	G	R	R	F	S	E	G	L	H	Q	A	I	E	A	K	E	G	V	Q	I	Q	N	E	S	K	T
Query Conservation		.	.
Alig confidence		.	.																																																																														.
Template Conservation																																																																																	.
Template Sequence		K	G	R	D	A	D	A	S	D	K	D	R	A	A	G	E	Q	K	L	Q	E	L	I	S	I	V	N	R	C	L	I	R	R	T	S	D	I	L	S	K	Y	L	P	V	K	I	E	Q	V	V	C	C	N	L	T	P	L	Q	K	E	L	Y	K	L	F	L	K	Q	A	K	P	V	E	S	L	Q	T	G	K	.
Template Known Secondary structure					S	T	T			S																										G	G	G	G	G	G	T	S																													G	G	G	S	S		T	T		.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.		.	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		M	A	S	I	T	F	Q	N	Y	F	R	M	Y	N	K	L	A	G	M	T	G	T	A	K	T	E	E	E	E	F	R	N	I	Y	N	M	T	V	T	Q	I	P	T	N	K	P	V	Q	R	N	D	K	S	D	L	I	Y	I	S	Q	K	G	K	F	D	A	V	V	E	D	V	V	E	K	H	.	K	A	G	Q
Query Conservation																																																																													.
Alig confidence		.																																																				.	.	.	.	.	.																		.
Template Conservation		.																																																				.	.	.	.	.	.
Template Sequence		.	I	S	V	S	S	L	S	S	I	T	S	L	K	K	L	C	N	H	P	A	L	I	Y	E	K	C	L	T	G	E	E	G	F	D	G	A	L	D	L	F	P	Q	N	Y	S	T	K	A	V	E	P	.	.	.	.	.	.	Q	L	S	G	K	M	L	V	L	D	Y	I	L	A	M	T	R	T	T	T	S	D
Template Known Secondary structure		.																			T										T		T	T		T	T	G	G	G	T	S		S	S			S	S	S			G	.	.	.	.	.	.	G	G	S
Template Predicted Secondary structure		.																																																				.	.	.	.	.	.
Template SS confidence
			436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.							.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.						.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
Predicted Secondary structure																																																			.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.
Query Sequence		P	V	L	L	G	T	V	A	V	E	T	S	E	Y	I	S	N	L	L	K	K	R	G	I	R	H	D	V	L	N	A	K	N	H	E	R	E	A	E	I	V	A	G	A	G	Q	K	G	A	.	.	.	.	.	V	T	I	A	T	N	M	A	G	R	G	T	D	I	K	L	G	E	G	V	E	E	L	G	G	L
Query Conservation																																																			.	.	.	.	.
Alig confidence																																																			.	.	.	.	.																	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.
Template Sequence		K	V	V	L	V	S	N	Y	T	Q	T	L	D	L	F	E	K	L	C	R	N	R	R	Y	L	Y	V	R	L	D	G	T	M	S	I	K	K	R	A	K	I	V	E	R	F	N	N	P	S	S	P	E	F	I	F	M	L	S	S	K	A	G	G	C	G	L	N	L	I	G	.	.	.	.	.	.	.	.	A	N
Template Known Secondary structure								S																T								S	S															S	T	T										G	G	G	S		T	T				T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.
Template SS confidence
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.									.	580
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	I	G	T	E	R	H	E	S	R	R	I	D	D	Q	L	R	G	R	S	G	R	Q	G	D	K	G	D	S	R	F	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	V	M	F	D	P	D	W	N	P	A	N	D	E	Q	A	M	A	R	V	W	R	D	G	Q	K	K	T	C	Y	I	Y
Template Known Secondary structure							S			S	S									T	T	S	S	S	T	T			S
Template Predicted Secondary structure
Template SS confidence
		581	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.