Job Description O06446 Confidence 93.18% Date Tue Jul 17 17:05:02 BST 2012 Rank 164 Aligned Residues 113 % Identity 27% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	E	G	K	T	L	T	A	T	M	P	T	Y	L	N	A	L	A	G	R	G	V	H	V	I	T	V	N	E	Y	L	S	S	V	Q	S	E	E	M	A	E	L	Y	N	F	L	G	L	T	V	G	L	N	L	N	S	K	T	T	E	E	K	R	E	A	Y	A	Q	D	I	T	Y	S	T	N	N	E	L	G
Query Conservation
Alig confidence																																				.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	.	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	G
Template Known Secondary structure		S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		.	S											T	T							S	S				T	T						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.														170
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	Y	L	R	D	N	M	V	N	Y	S	E	D	R	V	M	R	P	L	H	F	A	I	I	D	E	V	D	S	I	L	I	D	E	A	R	T	P	L	I	I	S	G	E	A	E	K	S	T	S	L	Y	T	Q	A	N	V	F	A	K	M	L	K	Q	D	E	D	Y	K	Y
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	I	F	V	.	.	.	.	.	.	.	.	.	.	.	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.		T	T		S									S			S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.																		S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.												.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.														.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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