Job Description O06446 Confidence 59.82% Date Tue Jul 17 17:05:02 BST 2012 Rank 257 Aligned Residues 60 % Identity 10% Template c1i6hA_ PDB info PDB header:transcription/dna-rna hybrid Chain: A: PDB Molecule:dna-directed rna polymerase ii largest subunit; PDBTitle: rna polymerase ii elongation complex Resolution 3.30 Å

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		783	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	V	E	D	N	I	E	R	E	K	T	T	E	F	G	E	A	K	H	V	S	A	E	D	G	K	E	K	V	K	P	K	P	I	V	K	G	D	Q	V	G	R	N	D	D	C	P	C	G	S	G	K	K	F	K	N	C	H	G	K
Query Conservation
Alig confidence																																																					.
Template Conservation																																																					.
Template Sequence		L	F	S	P	E	E	V	R	A	I	S	V	A	K	I	R	F	P	E	T	M	D	E	T	Q	T	R	A	K	I	G	G	L	N	D	P	R	L	G	S	I	D	R	N	L	K	C	Q	T	C	Q	.	E	G	M	N	E	C	P	G	H
Template Known Secondary structure																						S		B	T	T	B	S	S			S	S	S	S		S	S	S			S	T	T				S	T	T			.			S	S	S
Template Predicted Secondary structure																																																					.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions