18/07/2012 04:10:41 : INFO  : Run start: Wed Jul 18 04:10:41 BST 2012
18/07/2012 04:10:41 : INFO  : Initialised job
18/07/2012 04:10:41 : INFO  : Initialised job:
Sequence
>batch____
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQ
NDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPT
YLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITY
STNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLY
TQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTAL
RAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMAS
ITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGK
FDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGA
GQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGD
SRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARK
RILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQP
FIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILL
RSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILK
SVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNC
HGK

18/07/2012 04:10:41 : INFO  : Checked sequence
18/07/2012 04:10:42 : INFO  : Finding homologues with PSI-BLAST
18/07/2012 04:10:42 : INFO  : PSI-BLAST 3 iterations
18/07/2012 04:14:23 : INFO  : PSI-BLAST 5 iterations
18/07/2012 04:20:53 : INFO  : Finished PSI-BLAST
18/07/2012 04:20:53 : INFO  : Running Buildali to generate a3m file
18/07/2012 04:37:46 : INFO  : Converting to HMM
18/07/2012 04:37:53 : INFO  : Calibrating HMM
18/07/2012 04:38:15 : INFO  : Searching HMM database
18/07/2012 04:55:10 : INFO  : Finished buildali
18/07/2012 04:55:10 : INFO  : Predicting secondary structure
18/07/2012 04:55:11 : INFO  : Predicted secondary structure (PSI-Pred)
18/07/2012 04:55:11 : INFO  : Predicting Disordered regions
18/07/2012 04:55:11 : INFO  : Predicted Disorder (Disopred)
18/07/2012 04:55:11 : INFO  : Running memsat_svm check
18/07/2012 04:58:49 : INFO  : Globular protein
18/07/2012 04:58:49 : INFO  : Predicted Transmembrane (memsat_svm) ID '963cd0d565b47ac7'
18/07/2012 04:58:49 : INFO  : Initialising fold library search
18/07/2012 04:58:49 : INFO  : Initialised search input
18/07/2012 04:58:49 : INFO  : Building Ensemble models
18/07/2012 04:58:49 : INFO  : Building hh.c2ipcB_.model.1.pdb
18/07/2012 04:58:50 : INFO  : Building hh.c1nl3B_.model.2.pdb
18/07/2012 04:58:51 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/hh.c1nl3B_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/c1nl3B_.2.pdb
18/07/2012 04:58:51 : INFO  : Building hh.c2vdaA_.model.3.pdb
18/07/2012 04:58:52 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/hh.c2vdaA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/c2vdaA_.3.pdb
18/07/2012 04:58:52 : INFO  : Building hh.c3juxA_.model.4.pdb
18/07/2012 04:58:52 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/hh.c3juxA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/c3juxA_.4.pdb
18/07/2012 04:58:52 : INFO  : Building hh.c3dinB_.model.5.pdb
18/07/2012 04:58:53 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/hh.c3dinB_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/c3dinB_.5.pdb
18/07/2012 04:58:53 : INFO  : Building hh.c1tf2A_.model.6.pdb
18/07/2012 04:58:54 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/hh.c1tf2A_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/c1tf2A_.6.pdb
18/07/2012 04:58:54 : INFO  : Building hh.c2i9wA_.model.7.pdb
18/07/2012 04:58:54 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/hh.c2i9wA_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/c2i9wA_.88.pdb
18/07/2012 04:58:54 : INFO  : Building hh.c1ozbJ_.model.8.pdb
18/07/2012 04:58:55 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/hh.c1ozbJ_.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/c1ozbJ_.111.pdb
18/07/2012 04:58:55 : INFO  : Building hh.d1ozbi_.model.9.pdb
18/07/2012 04:58:55 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/hh.d1ozbi_.model.9.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/d1ozbi_.112.pdb
18/07/2012 04:58:55 : INFO  : Building hh.c1ozbI_.model.10.pdb
18/07/2012 04:58:55 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/hh.c1ozbI_.model.10.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/c1ozbI_.113.pdb
18/07/2012 04:58:55 : INFO  : Building hh.c1tm6A_.model.11.pdb
18/07/2012 04:58:56 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/hh.c1tm6A_.model.11.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/c1tm6A_.117.pdb
18/07/2012 04:58:56 : INFO  : Building hh.d1tm6a_.model.12.pdb
18/07/2012 04:58:56 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/hh.d1tm6a_.model.12.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/963cd0d565b47ac7/d1tm6a_.118.pdb
18/07/2012 04:58:56 : INFO  : Building c2ipcB_.1.pdb
18/07/2012 04:58:57 : INFO  : Building c1nl3B_.2.pdb
18/07/2012 04:58:58 : INFO  : Building c2vdaA_.3.pdb
18/07/2012 04:58:58 : INFO  : Building c3juxA_.4.pdb
18/07/2012 04:58:59 : INFO  : Building c3dinB_.5.pdb
18/07/2012 04:58:59 : INFO  : Building c1tf2A_.6.pdb
18/07/2012 04:59:00 : INFO  : Building c3dl8B_.7.pdb
18/07/2012 04:59:01 : INFO  : Building c2fsgA_.8.pdb
18/07/2012 04:59:02 : INFO  : Building d1nkta3.9.pdb
18/07/2012 04:59:03 : INFO  : Building c3bxzA_.10.pdb
18/07/2012 04:59:03 : INFO  : Building d1tf5a3.11.pdb
18/07/2012 04:59:04 : INFO  : Building d1nkta4.12.pdb
18/07/2012 04:59:04 : INFO  : Building d1tf5a2.13.pdb
18/07/2012 04:59:04 : INFO  : Building d1nkta2.14.pdb
18/07/2012 04:59:05 : INFO  : Building d1tf5a4.15.pdb
18/07/2012 04:59:05 : INFO  : Building d1nkta1.16.pdb
18/07/2012 04:59:06 : INFO  : Building d1tf5a1.17.pdb
18/07/2012 04:59:06 : INFO  : Building c2v1xB_.18.pdb
18/07/2012 04:59:07 : INFO  : Building c1oywA_.19.pdb
18/07/2012 04:59:07 : INFO  : Building c1gm5A_.20.pdb
18/07/2012 05:00:07 : INFO  : Finished HH model building
18/07/2012 05:00:07 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/07/2012 05:00:28 : INFO  : html domain output complete ID '963cd0d565b47ac7'
18/07/2012 08:42:54 : INFO  : Run end  : Wed Jul 18 08:42:54 BST 2012
