Job Description P52078 Confidence 100.00% Date Tue Jul 17 17:05:11 BST 2012 Rank 3 Aligned Residues 236 % Identity 31% Template c3qfiA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: x-ray crystal structure of transcriptional regulator (ef0465) from2 enterococcus faecalis, northeast structural genomics consortium3 target efr190 Resolution 2.71 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	E	E	Q	P	I	S	I	L	F	L	G	I	D	D	N	D	G	R	R	K	K	G	Q	D	A	E	H	S	R	S	D	A	M	I	L	T	T	F	N	Q	S	K	H	Q	I	R	M	L	S	I	P	R	D	T	I	S	Y	I	P	K	V	G	Y	Y	D	K	I	T	H	A	H	A	Y	G	G	P	I	A
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	A	Q	E	P	F	S	V	L	L	M	G	I	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	D	T	T	M	V	V	T	I	N	P	K	E	N	K	S	T	M	I	S	L	D	R	D	I	L	T	D	I	V	G	N	D	T	Q	D	K	L	N	H	A	Y	A	F	G	G	A	E	M
Template Known Secondary structure		T	T	T	T													.	.	.	.	.	.	.	.	.	.	.	.	.	.												G	G	G	T									T	T	B					T	T	T	T					T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.															.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		A	M	D	S	V	E	A	T	M	N	V	P	V	D	Y	Y	V	R	V	N	M	K	A	F	V	E	A	V	N	E	L	G	G	I	Y	Y	D	V	P	Y	D	L	N	E	P	N	T	D	D	T	G	K	I	K	I	K	K	G	Y	Q	K	L	N	G	D	E	A	L	A	V	A	R	T	R	H	H	.	.	D	S
Query Conservation																																																																														.	.
Alig confidence																																															.	.	.	.	.	.	.																									.	.
Template Conservation																																															.	.	.	.	.	.	.
Template Sequence		A	I	N	T	V	Q	E	L	L	D	I	P	I	H	H	Y	V	S	I	N	M	K	G	L	K	D	L	I	D	A	V	G	G	I	E	V	D	N	T	I	G	E	F	T	G	.	.	.	.	.	.	.	I	T	V	P	A	G	K	I	K	L	D	G	T	T	G	L	A	Y	A	R	M	R	H	E	D	P	E	G
Template Known Secondary structure										T	T	S																				T	T							S	S						.	.	.	.	.	.	.					S							S								S		S	S	S	S	T	T	T
Template Predicted Secondary structure																																															.	.	.	.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.								.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	K	R	G	Q	R	Q	M	E	L	I	K	I	L	F	Q	K	A	Q	E	V	D	S	I	D	K	L	D	N	V	I	Q	I	V	G	K	N	A	K	H	N	L	T	N	S	E	I	K	A	L	A	K	M	Y	L	T	N	D	V	E	I	K	T	A	Q	L	K	G	K	D	D	M	L	N	G	I	Y	Y	Y
Query Conservation
Alig confidence																								.	.	.	.
Template Conservation																								.	.	.	.
Template Sequence		D	V	G	R	Q	R	R	Q	R	E	V	V	E	K	I	V	R	K	V	M	S	F	.	.	.	.	D	Y	R	K	I	L	D	A	V	E	A	N	V	K	T	D	L	T	W	D	D	M	M	D	I	Q	S	K	Y	L	S	A	F	K	T	I	D	S	E	Q	L	Q	G	Y	S	A	T	I	D	D	I	Y	Y	Q
Template Known Secondary structure																					T	S		.	.	.	.			T	T	G	G	G	G	G	G	G	G				S										T	T	T	S	T	G	G	G	S														S	S	S
Template Predicted Secondary structure																								.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.					.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	S	V	E	S	I	Q	K	Y	A	N	L	L	R	K	D	L	E	L	S	P	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	D	P	N	S	L	Y	K	T	Q	T	T	L	R	K	Q	L	G	L	K	E	H
Template Known Secondary structure																			T	T
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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