Job Description P52078 Confidence 100.00% Date Tue Jul 17 17:05:11 BST 2012 Rank 5 Aligned Residues 224 % Identity 34% Template c3owqB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lin1025 protein; PDBTitle: x-ray structure of lin1025 protein from listeria innocua, northeast2 structural genomics consortium target lkr164 Resolution 2.61 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	P	I	S	I	L	F	L	G	I	D	D	N	D	G	R	R	K	K	G	Q	D	A	E	H	S	R	S	D	A	M	I	L	T	T	F	N	Q	S	K	H	Q	I	R	M	L	S	I	P	R	D	T	I	S	Y	I	P	K	V	G	Y	Y	D	K	I	T	H	A	H	A	Y	G	G	P	I	A	A	M	D
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template Sequence		K	K	P	F	S	V	L	L	X	G	S	D	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	D	T	I	I	L	A	T	A	N	K	Q	Q	N	A	V	E	X	V	S	I	P	R	D	T	K	V	N	G	.	.	.	.	D	I	G	K	I	N	A	S	Y	S	N	G	G	P	S	G	T	V	S
Template Known Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.												T	T	T	T									T	T	B	B				.	.	.	.				B	G	G	G	G	G	G	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.														.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.					.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		139	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.			.	.	.	.
Predicted Secondary structure							.																																																																					.	.
Query SS confidence							.																																																																					.	.
Query Sequence		S	V	E	A	T	.	M	N	V	P	V	D	Y	Y	V	R	V	N	M	K	A	F	V	E	A	V	N	E	L	G	G	I	Y	Y	D	V	P	Y	D	L	N	E	P	N	T	D	D	T	G	K	I	K	I	K	K	G	Y	Q	K	L	N	G	D	E	A	L	A	V	A	R	T	R	H	H	.	.	D	S	D	L
Query Conservation							.																																																																					.	.
Alig confidence							.																																									.	.	.	.	.	.																							.	.
Template Conservation																																																.	.	.	.	.	.
Template Sequence		A	V	E	K	L	X	P	G	V	P	V	D	Y	F	I	S	I	N	X	E	G	F	K	D	L	V	D	A	V	G	G	I	T	V	Y	N	D	I	D	L	T	E	V	N	S	K	.	.	.	.	.	.	F	V	K	G	N	I	T	L	N	G	T	D	A	L	Q	Y	V	R	I	R	H	E	D	P	R	G	D	F
Template Known Secondary structure						S	S	T	T																					T	T								S			T	T	T		T	T	.	.	.	.	.	.			S															T			T	T		T	T
Template Predicted Secondary structure																																																.	.	.	.	.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.							.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		K	R	G	Q	R	Q	M	E	L	I	K	I	L	F	Q	K	A	Q	E	V	D	S	I	D	K	L	D	N	V	I	Q	I	V	G	K	N	A	K	H	N	L	T	N	S	E	I	K	A	L	A	K	M	Y	L	T	N	D	V	E	I	K	T	A	Q	L	K	G	K	D	D	M	L	N	G	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.																																									.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.
Template Sequence		G	R	Q	D	R	Q	R	D	V	I	I	G	I	A	N	K	V	I	S	S	S	G	X	K	A	V	G	.	.	.	.	.	.	.	D	N	F	Q	T	N	X	T	L	T	D	I	T	S	X	A	T	N	Y	S	S	V	L	K	N	V	D	S	Q	E	L	K	G	E	G	E	X	I	Y	S	E	S	Y	G	F	D
Template Known Secondary structure																			T	S	S				T	T	T	G	.	.	.	.	.	.	.	G	G				S														G	G	G	G	G	S																T	T	T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.								.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	Y	Y	H	P	S	V	E	S	I	Q	K	Y	A	N	L	L	R	K	D	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Y	Y	F	A	P	D	E	T	D	L	E	R	V	I	N	X	F	K	K	S	L	D
Template Known Secondary structure									T	T												T
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions