Job Description P52078 Confidence 100.00% Date Tue Jul 17 17:05:11 BST 2012 Rank 7 Aligned Residues 214 % Identity 36% Template c3nxhA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator yvhj; PDBTitle: crystal structure of the transcriptional regulator yvhj from bacillus2 subtilis. northeast structural genomics consortium target sr735. Resolution 2.58 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	Q	P	I	S	I	L	F	L	G	I	D	D	N	D	G	R	R	K	K	G	Q	D	A	E	H	S	R	S	D	A	M	I	L	T	T	F	N	Q	S	K	H	Q	I	R	M	L	S	I	P	R	D	T	I	S	Y	I	P	K	V	G	Y	Y	D	K	I	T	H	A	H	A	Y	G	G	P	I	A	A	M
Query Conservation
Alig confidence																					.	.	.	.	.	.																																						.	.	.
Template Conservation																					.	.	.	.	.	.																																						.	.	.
Template Sequence		K	K	K	P	F	S	I	L	F	X	G	I	E	D	Y	A	T	K	G	.	.	.	.	.	.	Q	K	G	R	S	D	S	L	I	V	V	T	L	D	P	K	N	K	T	X	K	X	L	S	I	P	R	D	T	R	V	Q	L	A	S	K	T	.	.	.	K	I	N	A	A	Y	S	K	G	G	K	D	E	T	V
Template Known Secondary structure														S		S	S			S	.	.	.	.	.	.	T	T				S									G	G	G	T									T	T	B									.	.	.			S		T	T	T	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.																																						.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.							.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.				.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	V	E	A	T	M	N	V	P	V	D	Y	Y	V	R	V	N	M	K	A	F	V	E	A	V	N	E	L	G	G	I	Y	Y	D	V	P	Y	D	L	N	E	P	N	T	D	D	T	G	K	I	K	I	K	K	G	Y	Q	K	L	N	G	D	E	A	L	A	V	A	R	T	R	H	H	D	S	D	L	K	R
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Sequence		E	T	V	E	N	F	L	Q	I	P	I	D	K	Y	V	T	V	D	F	D	G	F	K	D	V	I	N	E	V	G	G	I	D	V	D	V	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	X	H	L	N	G	E	E	A	L	A	Y	.	.	.	.	.	.	.	A	D	F	G	R
Template Known Secondary structure									T	S																					T					.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.				S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.																				.	.	.	190	.	.	.	.	.	.	.								.	.	200	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.
Predicted Secondary structure																																																							.																		.	.
Query SS confidence																																																							.																		.	.
Query Sequence		G	Q	R	Q	M	E	L	I	K	I	L	F	Q	K	A	Q	E	V	D	S	I	D	K	L	D	N	V	I	Q	I	V	G	K	N	A	K	H	N	L	T	N	S	E	I	K	A	L	A	K	M	Y	L	T	.	N	D	V	E	I	K	T	A	Q	L	K	G	K	D	D	M	L	.	.	N	G	I	Y	Y	Y	H
Query Conservation																																																							.																		.	.
Alig confidence																			.	.	.	.	.	.	.	.																													.																		.	.
Template Conservation																			.	.	.	.	.	.	.	.
Template Sequence		N	D	R	Q	K	Q	I	L	N	A	L	I	D	R	X	S	D	.	.	.	.	.	.	.	.	K	I	A	E	K	A	S	E	N	V	E	T	N	I	R	I	T	E	G	L	A	L	Q	Q	I	Y	S	G	F	T	S	K	K	I	D	T	L	S	I	T	G	S	D	L	Y	L	G	P	N	N	T	Y	Y	F	E
Template Known Secondary structure															T	T			.	.	.	.	.	.	.	.								T	T	S																T	T	S	S		S	S															T	T	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.									.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	V	E	S	I	Q	K	Y	A	N	L	L	R	K	D	L	E	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	D	A	T	N	L	E	K	V	R	K	T	L	Q	E	H	L	D	Y	T
Template Known Secondary structure																			T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions