Job Description P52078 Confidence 100.00% Date Tue Jul 17 17:05:11 BST 2012 Rank 6 Aligned Residues 226 % Identity 33% Template c3nroA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo1026 protein; PDBTitle: crystal structure of putative transcriptional factor lmo1026 from2 listeria monocytogenes (fragment 52-321), northeast structural3 genomics consortium target lmr194 Resolution 2.90 Å

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		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	E	Q	P	I	S	I	L	F	L	G	I	D	D	N	D	G	R	R	K	K	G	Q	D	A	E	H	S	R	S	D	A	M	I	L	T	T	F	N	Q	S	K	H	Q	I	R	M	L	S	I	P	R	D	T	I	S	Y	I	P	K	V	G	Y	Y	D	K	I	T	H	A	H	A	Y	G	G	P	I	A	A
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template Sequence		E	K	K	K	P	F	S	V	L	L	X	G	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	D	T	I	I	L	A	T	A	N	K	Q	Q	N	A	V	E	X	V	S	I	P	R	D	T	K	V	D	Y	G	N	G	D	.	I	G	K	I	N	A	S	Y	S	N	G	G	P	S	G	T
Template Known Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S									T	T	T	T									T	T	B					S	S	S		.				T	T	T	T	S	S	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.																.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		137	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.			.	.
Predicted Secondary structure									.																																																																					.	.
Query SS confidence									.																																																																					.	.
Query Sequence		M	D	S	V	E	A	T	.	M	N	V	P	V	D	Y	Y	V	R	V	N	M	K	A	F	V	E	A	V	N	E	L	G	G	I	Y	Y	D	V	P	Y	D	L	N	E	P	N	T	D	D	T	G	K	I	K	I	K	K	G	Y	Q	K	L	N	G	D	E	A	L	A	V	A	R	T	R	H	H	.	.	D	S
Query Conservation									.																																																																					.	.
Alig confidence									.																																									.	.	.	.	.	.																							.	.
Template Conservation																																																		.	.	.	.	.	.
Template Sequence		V	S	A	V	E	K	L	X	P	G	V	P	V	D	Y	F	I	S	I	N	X	E	G	F	K	D	L	V	D	A	V	G	G	I	T	V	Y	N	D	I	D	L	T	E	V	N	S	K	.	.	.	.	.	.	F	V	K	G	N	I	T	L	N	G	T	E	A	L	Q	Y	V	R	I	R	H	E	D	P	R	G
Template Known Secondary structure									S	S	S											T	T								T	T	T		B						S		B		T	T	T	S		.	.	.	.	.	.	B		S					B													T	T	S	T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.							.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		D	L	K	R	G	Q	R	Q	M	E	L	I	K	I	L	F	Q	K	A	Q	E	V	D	S	I	D	K	L	D	N	V	I	Q	I	V	G	K	N	A	K	H	N	L	T	N	S	E	I	K	A	L	A	K	M	Y	L	T	N	D	V	E	I	K	T	A	Q	L	K	G	K	D	D	M	L	N	G	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.
Template Sequence		D	F	G	R	Q	D	R	Q	R	D	V	I	I	G	I	A	N	K	V	S	I	X	K	A	V	G	.	.	.	.	.	.	.	.	.	.	D	N	F	Q	T	N	X	T	L	T	D	I	T	S	X	A	A	N	Y	S	S	V	L	K	N	V	D	S	Q	E	L	K	G	E	G	E	X	I	Y	S	E	S	Y	G
Template Known Secondary structure																		T	T						S			.	.	.	.	.	.	.	.	.	.	T	T																			T	T	S	S																	T	T	T	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.											240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
				290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	I	Y	Y	Y	H	P	S	V	E	S	I	Q	K	Y	A	N	L	L	R	K	D	L	E	L	S
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		F	D	L	Y	Y	F	A	P	D	K	T	D	L	E	R	I	I	T	X	F	K	K	S	L	D	I	T
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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