Job Description P52078 Confidence 100.00% Date Tue Jul 17 17:05:11 BST 2012 Rank 4 Aligned Residues 248 % Identity 40% Template c3mejA_ PDB info PDB header:transcriptional regulator Chain: A: PDB Molecule:transcriptional regulator ywtf; PDBTitle: crystal structure of putative transcriptional regulator ywtf from2 bacillus subtilis, northeast structural genomics consortium target3 sr736 Resolution 2.49 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	S	K	N	A	N	R	Q	S	N	L	R	D	N	K	V	N	P	E	E	Q	P	I	S	I	L	F	L	G	I	D	D	N	D	G	R	R	K	K	G	Q	D	A	E	H	S	R	S	D	A	M	I	L	T	T	F	N	Q	S	K	H	Q	I	R	M	L	S	I	P	R	D	T	I	S	Y	I	P	K	V
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	V	S	L	A	R	G	E	Q	S	V	K	R	I	K	E	F	D	P	G	K	D	S	F	S	V	L	L	L	G	I	D	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	D	A	N	V	L	V	T	F	N	R	K	E	K	T	A	K	X	L	S	I	P	R	D	A	Y	V	N	I	P	G	H
Template Known Secondary structure						T	T		S	S		T	T		S	S				S	S	S	S													.	.	.	.	.	.	.	.	.	.	.	.	.												T	T	T	T									T	T	B					T	T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.														.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.
Query SS confidence																																																																			.	.
Query Sequence		G	Y	Y	D	K	I	T	H	A	H	A	Y	G	G	P	I	A	A	M	D	S	V	E	A	T	M	N	V	P	V	D	Y	Y	V	R	V	N	M	K	A	F	V	E	A	V	N	E	L	G	G	I	Y	Y	D	V	P	Y	D	L	N	E	P	N	T	D	.	.	D	T	G	K	I	K	I	K	K	G	Y	Q	K
Query Conservation																																																																			.	.
Alig confidence			.																																																																.	.
Template Conservation			.
Template Sequence		G	.	Y	D	K	F	T	H	A	H	A	Y	G	G	V	D	L	T	V	K	T	V	E	E	X	L	D	I	P	V	D	Y	V	V	E	S	N	F	T	A	F	E	D	V	V	N	E	L	N	G	V	K	V	T	V	K	S	D	K	V	I	Q	Q	I	K	K	D	T	K	G	K	V	V	L	Q	K	G	T	H	T
Template Known Secondary structure			.				T	T																					S																				T	T																			T	T	T	S					S
Template Predicted Secondary structure			.
Template SS confidence
		128		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	G	D	E	A	L	A	V	A	R	T	R	H	H	D	S	D	L	K	R	G	Q	R	Q	M	E	L	I	K	I	L	F	Q	K	A	Q	E	V	D	S	I	D	K	L	D	N	V	I	Q	I	V	G	K	N	A	K	H	N	L	T	N	S	E	I	K	A	L	A	K	M	Y	L	T	N	D	V	E	I	K
Query Conservation
Alig confidence																.	.																													.	.	.	.	.	.	.	.	.	.																							.
Template Conservation																.	.																													.	.	.	.	.	.	.	.	.	.																							.
Template Sequence		L	D	G	E	E	A	L	A	Y	V	R	T	R	K	.	.	S	D	L	L	R	G	Q	R	Q	X	E	V	L	S	A	I	I	D	K	S	K	S	L	D	T	X	G	Q	.	.	.	.	.	.	.	.	.	.	N	L	K	X	N	L	S	L	K	D	A	I	G	L	F	P	F	I	T	S	L	K	.	S	V	E
Template Known Secondary structure																.	.				S																									.	.	.	.	.	.	.	.	.	.	S				S	S													T	T		S	.
Template Predicted Secondary structure																.	.																													.	.	.	.	.	.	.	.	.	.																							.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.											.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	Q	L	K	G	K	D	D	M	L	N	G	I	Y	Y	Y	H	P	S	V	E	S	I	Q	K	Y	A	N	L	L	R	K	D	L	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	Q	L	T	G	Y	D	Y	E	P	A	G	V	Y	Y	F	K	L	N	Q	Q	K	L	Q	E	V	K	K	E	L	Q	N	D	L	G	V
Template Known Secondary structure												T	T	S																							T
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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