Job Description P52078 Confidence 5.28% Date Tue Jul 17 17:05:11 BST 2012 Rank 36 Aligned Residues 91 % Identity 13% Template c2kwpA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation protein nusa; PDBTitle: solution structure of the aminoterminal domain of e. coli nusa Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	A	M	D	S	V	E	A	T	M	N	V	P	V	D	Y	Y	V	R	V	N	M	K	A	F	V	E	A	V	N	E	L	G	G	I	Y	Y	D	V	P	Y	D	L	N	E	P	N	T	D	D	T	G	K	I	K	I	K	K	G	Y	Q	K	L	N	G	D	E	A	L	A	V	A	R	T	R	H	H	D	S
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.
Template Sequence		S	A	L	A	T	A	T	K	K	K	Y	E	Q	E	I	D	V	R	V	Q	I	D	R	K	S	.	.	.	.	.	.	.	.	G	D	F	D	T	F	R	R	W	L	V	V	D	E	V	T	Q	P	T	K	E	I	T	L	E	A	A	R	Y	E	D	E	S	L	N	L	G	D	Y	V	E	D	Q	I	E	S	V
Template Known Secondary structure														S										T	T	T	.	.	.	.	.	.	.	.	T												T	T		S		T	T	T												T	T			T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.									.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		214	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		D	L	K	R	G	Q	R	Q	M	.	.	E	L	I	K	I	L	F	Q	K	A
Query Conservation											.	.
Alig confidence											.	.
Template Conservation
Template Sequence		T	F	D	R	I	T	T	Q	T	A	K	Q	V	I	V	Q	K	V	R	E	A
Template Known Secondary structure			G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions