Job Description O08387 Confidence 100.00% Date Tue Jul 17 17:05:02 BST 2012 Rank 1 Aligned Residues 413 % Identity 41% Template c3j01A_ PDB info PDB header:ribosome/ribosomal protein Chain: A: PDB Molecule:preprotein translocase secy subunit; PDBTitle: structure of the ribosome-secye complex in the membrane environment Resolution 7.10 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		T	K	E	V	R	N	K	I	F	F	T	L	A	M	L	V	I	F	K	I	G	T	Y	I	P	A	P	G	V	N	P	A	A	F	D	N	.	.	P	Q	G	S	Q	G	A	T	E	L	L	N	T	F	G	G	G	A	L	K	R	F	S	I	F	A	M	G	I	V	P	Y	I	T	A	S	I	V	M	Q	L	L
Query Conservation																																						.	.
Alig confidence																																						.	.
Template Conservation
Template Sequence		L	G	E	L	K	R	R	L	L	F	V	I	G	A	L	I	V	F	R	I	G	S	F	I	P	I	P	G	I	D	A	A	V	L	A	K	L	L	E	Q	Q	R	G	T	I	I	E	M	F	N	M	F	S	G	G	A	L	S	R	A	S	I	F	A	L	G	I	M	P	Y	I	S	A	S	I	I	I	Q	L	L
Template Known Secondary structure		S		S	S	S								T										S		S	T	T			S	S	S	S			S	S		S		S		S			S	S	S					T			S	S	S					S	S			S
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		Q	M	D	I	V	P	K	F	S	E	W	A	K	Q	G	E	V	G	R	R	K	L	N	N	V	T	R	Y	L	A	I	S	L	A	F	I	Q	S	I	G	M	A	F	Q	F	N	N	Y	L	K	G	.	A	L	I	I	N	Q	S	I	M	S	Y	L	L	I	A	L	V	L	T	A	G	T	A	F	L	I	W	L
Query Conservation																																																					.
Alig confidence			.																																																		.
Template Conservation			.
Template Sequence		T	.	V	V	H	P	T	L	A	E	I	K	K	E	G	E	S	G	R	R	K	I	S	Q	Y	T	R	Y	G	T	L	V	L	A	I	F	Q	S	I	G	I	A	T	G	L	P	N	M	P	G	M	Q	G	L	V	I	N	P	G	F	A	F	Y	F	T	A	V	V	S	L	V	T	G	T	M	F	L	M	W	L
Template Known Secondary structure			.				S	S	S	S	S		S			T																														G	G	G	S	S				S					S		S		S	T	T
Template Predicted Secondary structure			.
Template SS confidence
		96		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	Q	I	T	Q	F	G	V	G	N	G	I	S	I	I	I	F	A	G	I	L	S	T	L	P	A	S	L	I	Q	F	G	Q	T	A	F	V	G	Q	E	D	T	S	L	A	W	L	K	V	L	G	L	L	V	S	L	I	L	L	T	V	G	A	I	Y	V	L	E	A	V	R	K	I	P	I	Q	Y	A	K
Query Conservation
Alig confidence																															.	.	.	.
Template Conservation																															.	.	.	.
Template Sequence		G	E	Q	I	T	E	R	G	I	G	N	G	I	S	I	I	I	F	A	G	I	V	A	G	L	P	P	A	I	.	.	.	.	A	H	T	I	E	Q	A	R	Q	G	D	L	H	F	L	V	L	L	L	V	A	V	L	V	F	A	V	T	F	F	V	V	F	V	E	R	G	Q	R	R	I	V	V	N	Y	A	K
Template Known Secondary structure					S	T	T	S			S	S	S													S	S	T	T	S	.	.	.	.	S	S				S	S	S	S	T	T	S	S	S																	T	T						S
Template Predicted Secondary structure																															.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.					.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		248	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.				.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure									.																																									.	.	.
Query SS confidence									.																																									.	.	.
Query Sequence		K	Q	T	A	Q	R	L	.	G	S	Q	A	T	Y	L	P	L	K	V	N	S	A	G	V	I	P	V	I	F	A	M	A	F	F	L	L	P	R	T	L	T	L	F	Y	P	D	K	E	.	.	.	W	A	Q	N	I	A	N	A	A	N	P	S	S	N	V	G	M	V	V	Y	I	V	L	I	I	L	F	T	Y
Query Conservation									.																																									.	.	.
Alig confidence									.																																									.	.	.
Template Conservation
Template Sequence		R	Q	Q	G	R	R	V	Y	A	A	Q	S	T	H	L	P	L	K	V	N	M	A	G	V	I	P	A	I	F	A	S	S	I	I	L	F	P	A	T	I	A	S	W	F	G	G	G	T	G	W	N	W	L	T	T	I	S	L	Y	L	Q	P	G	Q	P	L	Y	V	L	L	Y	A	S	A	I	I	F	F	C	F
Template Known Secondary structure				S	S												S						S	S		S		S	S																S	S	S				S	S			S	S	S	S					S	S	G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Y	A	F	V	Q	V	N	P	E	K	M	A	D	N	L	K	K	Q	G	S	Y	V	P	G	I	R	P	G	E	Q	T	K	K	Y	I	T	K	V	L	Y	R	L	T	F	V	G	S	I	F	L	A	V	I	S	I	L	P	I	L	A	T	K	F	M	G	L	P	Q	S	I	Q	I	G	G	T	S	L	L	I
Query Conservation
Alig confidence																																																																						.	.
Template Conservation																																																																						.	.
Template Sequence		F	Y	T	A	L	V	F	N	P	R	E	T	A	D	N	L	K	K	S	G	A	F	V	P	G	I	R	P	G	E	Q	T	A	K	Y	I	D	K	V	M	T	R	L	T	L	V	G	A	L	Y	I	T	F	I	C	L	I	P	E	F	M	R	D	A	M	K	V	P	.	.	F	Y	F	G	G	T	S	L	L	I
Template Known Secondary structure							S	S		T	T						T	T	S	T	T		S	S	S			S	S	S	S	S	S		S																											T	T	S			S	S	S	.	.	S	S	S
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.			.	400	.	.	.	.	.	.	.	.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	G	V	A	I	E	T	M	K	S	L	E	A	Q	V	S	Q	K	E	Y	K	G	F	G	G	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	V	V	I	M	D	F	M	A	Q	V	Q	T	L	M	M	S	S	Q	Y	E	S	A	L	K	K
Template Known Secondary structure		T															T	S							S		S
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.