Job Description O08387 Confidence 100.00% Date Tue Jul 17 17:05:02 BST 2012 Rank 3 Aligned Residues 401 % Identity 42% Template c3dl8H_ PDB info PDB header:protein transport Chain: H: PDB Molecule:preprotein translocase subunit secy; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca Resolution 7.50 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	T	K	E	V	R	N	K	I	F	F	T	L	A	M	L	V	I	F	K	I	G	T	Y	I	P	A	P	G	V	N	P	A	A	F	D	N	P	Q	G	S	Q	G	A	T	E	L	L	N	T	F	G	G	G	A	L	K	R	F	S	I	F	A	M	G	I	V	P	Y	I	T	A	S	I	V	M	Q	L	L
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	E	L	K	E	L	R	Q	K	F	I	F	T	L	L	M	F	V	I	Y	R	L	G	S	H	I	P	I	P	G	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	L	Y	D	I	F	S	G	G	N	L	G	R	L	T	V	F	A	L	G	V	M	P	Y	I	S	A	S	I	M	M	Q	L	L
Template Known Secondary structure			S																									S	S					.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S	S	S	S			S	S	S				S	S	S	S	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40														.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.
Query SS confidence																																																					.	.	.
Query Sequence		Q	M	D	I	V	P	K	F	S	E	W	A	K	Q	G	E	V	G	R	R	K	L	N	N	V	T	R	Y	L	A	I	S	L	A	F	I	Q	S	I	G	M	A	F	Q	F	N	N	Y	L	K	G	.	.	.	A	L	I	I	N	Q	S	I	M	S	Y	L	L	I	A	L	V	L	T	A	G	T	A	F	L	I
Query Conservation																																																					.	.	.
Alig confidence																																																					.	.	.
Template Conservation
Template Sequence		T	V	A	I	P	S	L	Q	R	L	A	K	E	E	G	D	Y	G	R	Y	K	I	N	E	Y	T	K	Y	L	T	L	F	V	A	T	V	Q	S	L	G	I	A	F	W	I	R	G	Q	V	S	P	K	G	I	P	V	V	E	N	P	G	I	S	F	I	L	I	T	V	L	T	L	V	A	G	T	M	F	L	V
Template Known Secondary structure					S	S		S	S	S		S		S	S	S																																	S		S	S						S	S	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	G	D	Q	I	T	Q	F	G	V	G	N	G	I	S	I	I	I	F	A	G	I	L	S	T	L	P	A	S	L	I	Q	F	G	Q	T	A	F	V	G	Q	E	D	T	S	L	A	W	L	K	V	L	G	L	L	V	S	L	I	L	L	T	V	G	A	I	Y	V	L	E	A	V	R	K	I	P	I	Q	Y
Query Conservation
Alig confidence																																	.	.	.	.
Template Conservation																																	.	.	.	.
Template Sequence		W	I	A	D	R	I	T	E	K	G	I	G	N	G	A	S	L	I	I	F	A	G	I	V	A	N	F	P	N	A	V	.	.	.	.	I	Q	F	Y	E	K	V	K	T	G	D	I	G	P	L	T	L	L	L	I	I	A	L	I	I	A	I	I	V	G	I	V	Y	V	Q	E	A	E	R	R	I	P	I	Q	Y
Template Known Secondary structure											T		T	T														T	T	T	T	S	.	.	.	.	S					S	S	S		S	S	S		T																		T		S										B
Template Predicted Secondary structure																																	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		A	K	K	Q	T	A	Q	R	L	.	G	S	Q	A	T	Y	L	P	L	K	V	N	S	A	G	V	I	P	V	I	F	A	M	A	F	F	L	L	P	R	T	L	T	L	F	Y	P	D	K	E	W	A	Q	N	I	A	N	A	A	N	P	S	S	N	V	G	M	V	V	Y	I	V	L	I	I	L	F	T	Y	F
Query Conservation											.
Alig confidence											.																																					.
Template Conservation																																																.
Template Sequence		P	G	R	Q	V	G	R	Q	L	Y	A	G	R	K	T	Y	L	P	I	K	I	N	P	A	G	V	I	P	I	I	F	A	Q	A	L	L	L	I	P	S	T	L	L	N	F	V	.	Q	N	P	F	I	K	V	I	A	D	M	F	Q	P	G	A	I	F	Y	N	F	L	Y	V	T	F	I	V	F	F	T	Y	F
Template Known Secondary structure		S	S	S		B																					S	S																		S		.	S	S					T	T	T	T	T	T	T	T	T
Template Predicted Secondary structure																																																.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	F	V	Q	V	N	P	E	K	M	A	D	N	L	K	K	Q	G	S	Y	V	P	G	I	R	P	G	E	Q	T	K	K	Y	I	T	K	V	L	Y	R	L	T	F	V	G	S	I	F	L	A	V	I	S	I	L	P	I	L	A	T	K	F	M	G	L	P	Q	S	I	Q	I	G	G	T	S	L	L	I	V
Query Conservation
Alig confidence																																																																					.	.
Template Conservation																																																																					.	.
Template Sequence		Y	T	A	V	L	I	N	P	V	E	L	A	E	N	L	H	K	A	G	A	F	I	P	G	V	R	P	G	Q	D	T	V	K	Y	L	E	R	I	I	N	R	L	I	F	F	G	A	L	F	L	S	V	I	A	L	I	P	I	L	I	S	V	W	F	N	I	P	.	.	F	Y	F	G	G	T	T	A	L	I	V
Template Known Secondary structure				T		T	T								T					B	S	S	S	B																																						T	T	S	S			S	.	.				S	T
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.			.	.	.	.	.	.	.	400	.	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	V	A	I	E	T	M	K	S	L	E	A	Q	V	S	Q	K	E	Y	K	G	F	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	V	A	L	D	T	F	R	Q	I	E	T	Y	L	I	Q	K	K	Y	K	S	Y	V	R
Template Known Secondary structure																					T	T		S
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.