Job Description O08387 Confidence 100.00% Date Tue Jul 17 17:05:02 BST 2012 Rank 4 Aligned Residues 394 % Identity 39% Template c3dinF_ PDB info PDB header:membrane protein, protein transport Chain: F: PDB Molecule:preprotein translocase subunit secy; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase Resolution 4.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	R	T	K	E	V	R	N	K	I	F	F	T	L	A	M	L	V	I	F	K	I	G	T	Y	I	P	A	P	G	V	N	P	A	A	F	D	N	P	Q	G	S	Q	G	A	T	E	L	L	N	T	F	G	G	G	A	L	K	R	F	S	I	F	A	M	G	I	V	P	Y	I	T	A	S	I	V	M	Q	L
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	F	K	I	P	E	L	R	D	R	I	I	F	T	F	L	A	L	I	V	F	R	M	G	I	Y	I	P	V	P	G	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	F	Y	D	V	F	T	G	G	A	L	S	R	F	S	V	F	T	M	S	V	T	P	Y	I	T	A	S	I	I	L	Q	L
Template Known Secondary structure				S		S			S	S																	S		S	S					.	.	.	.	.	.	.	.	.	.	.	.	.			T	T						S	S	S	S				S	S	S	S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40														.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		L	Q	M	D	I	V	P	K	F	S	E	W	A	K	Q	G	E	V	G	R	R	K	L	N	N	V	T	R	Y	L	A	I	S	L	A	F	I	Q	S	I	G	M	A	F	Q	F	N	N	Y	L	K	G	.	A	L	I	I	N	Q	S	I	M	S	Y	L	L	I	A	L	V	L	T	A	G	T	A	F	L	I	W
Query Conservation																																																						.
Alig confidence				.																																																		.
Template Conservation				.
Template Sequence		L	A	.	S	V	M	P	S	L	K	E	M	L	R	E	G	E	E	G	R	K	K	F	A	K	Y	T	R	R	L	T	L	L	I	G	G	F	Q	A	F	F	V	S	F	S	L	A	R	S	N	P	D	M	V	A	P	G	V	N	V	L	Q	F	T	V	L	S	T	M	S	M	L	A	G	T	M	F	L	L	W
Template Known Secondary structure				.			S		S	S	S	S		S			T	T																																		S	S								S	S
Template Predicted Secondary structure				.
Template SS confidence
		95	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	D	Q	I	T	Q	F	G	V	G	N	G	I	S	I	I	I	F	A	G	I	L	S	T	L	P	A	S	L	I	Q	F	G	Q	T	A	F	V	G	Q	E	D	T	S	L	A	W	L	K	V	L	G	L	L	V	S	L	I	L	L	T	V	G	A	I	Y	V	L	E	A	V	R	K	I	P	I	Q	Y	A
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.
Template Sequence		L	G	E	R	I	T	E	K	G	I	G	N	G	I	S	I	L	I	F	A	G	I	V	A	R	Y	P	S	Y	I	.	.	.	.	.	.	.	.	R	Q	A	Y	L	G	G	L	N	L	L	E	W	I	F	L	I	A	V	A	L	I	T	I	F	G	I	I	L	V	Q	Q	A	E	R	R	I	T	I	Q	Y	A
Template Known Secondary structure							T	T	T	T		T	T														S	T	T	S	S	.	.	.	.	.	.	.	.	S			S	S			S		T																		T	T	T											B	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.									.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		247	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		K	K	Q	T	A	Q	R	L	.	G	S	Q	A	T	Y	L	P	L	K	V	N	S	A	G	V	I	P	V	I	F	A	M	A	F	F	L	L	P	R	T	L	T	L	F	Y	P	D	K	E	W	A	Q	N	I	A	N	A	A	N	P	S	S	N	V	G	M	V	V	Y	I	V	L	I	I	L	F	T	Y	F	Y
Query Conservation										.
Alig confidence										.																																								.	.	.	.
Template Conservation																																																		.	.	.	.
Template Sequence		R	R	V	T	G	R	R	V	Y	G	G	A	S	T	Y	L	P	I	K	V	N	Q	G	G	V	I	P	I	I	F	A	S	A	I	V	S	I	P	S	A	I	A	S	I	T	N	N	E	.	.	.	.	T	L	K	N	L	F	R	A	G	G	F	L	Y	L	L	I	Y	G	L	L	V	F	F	F	T	Y	F	Y
Template Known Secondary structure		T	T	B																						S	S																T	T	S	S	T	T		.	.	.	.						S	S	T	T
Template Predicted Secondary structure																																																		.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.					.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	V	Q	V	N	P	E	K	M	A	D	N	L	K	K	Q	G	S	Y	V	P	G	I	R	P	G	E	Q	T	K	K	Y	I	T	K	V	L	Y	R	L	T	F	V	G	S	I	F	L	A	V	I	S	I	L	P	I	L	A	T	K	F	M	G	L	P	Q	S	I	Q	I	G	G	T	S	L	L	I	V	I
Query Conservation
Alig confidence																																																																				.	.
Template Conservation																																																																				.	.
Template Sequence		S	V	V	I	F	D	P	R	E	I	S	E	N	I	R	K	Y	G	G	Y	I	P	G	L	R	P	G	R	S	T	E	Q	Y	L	H	R	V	L	N	R	V	T	F	I	G	A	V	F	L	V	V	I	A	L	L	P	Y	L	V	Q	G	A	I	K	V	N	.	.	V	W	I	G	G	T	S	A	L	I	A	V
Template Known Secondary structure			T		T	T						T	T	S							S	S						T	T																																T	T	T	S			S	.	.			T	T
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.			.	.	390	.	.	.	.	.	.	.	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	A	I	E	T	M	K	S	L	E	A	Q	V	S	Q	K	E	Y	K	G	F	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	A	L	D	I	I	Q	Q	M	E	T	H	M	V	M	R	H	Y	E	G	F	I	K
Template Known Secondary structure																				S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.