Job Description O08387 Confidence 100.00% Date Tue Jul 17 17:05:02 BST 2012 Rank 2 Aligned Residues 410 % Identity 38% Template c2zqpY_ PDB info PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: crystal structure of secye translocon from thermus2 thermophilus Resolution 6.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		M	I	Q	T	L	V	N	F	F	R	T	K	E	V	R	N	K	I	F	F	T	L	A	M	L	V	I	F	K	I	G	T	Y	I	P	A	P	G	V	N	P	A	A	F	D	N	P	.	.	Q	G	S	Q	G	A	T	E	L	L	N	T	F	G	G	G	A	L	K	R	F	S	I	F	A	M	G	I	V	P	Y
Query Conservation																																																	.	.
Alig confidence																																																	.	.
Template Conservation
Template Sequence		M	V	K	A	F	W	S	A	L	Q	I	P	E	L	R	Q	R	V	L	F	T	L	L	V	L	A	A	Y	R	L	G	A	F	I	P	T	P	G	V	D	L	D	K	I	Q	E	F	L	R	T	A	Q	G	G	V	F	G	I	I	N	L	F	S	G	G	N	F	E	R	F	S	I	F	A	L	G	I	M	P	Y
Template Known Secondary structure				S						T	T	S	T	T																			T	T				T	T	B		G	G	G	T					S	S	T	T	T	G	G	G								T	S	T	T	T	T	T		T	T	S	S	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.
Query SS confidence																																																																			.	.	.
Query Sequence		I	T	A	S	I	V	M	Q	L	L	Q	M	D	I	V	P	K	F	S	E	W	A	K	Q	G	E	V	G	R	R	K	L	N	N	V	T	R	Y	L	A	I	S	L	A	F	I	Q	S	I	G	M	A	F	Q	F	N	N	Y	L	K	G	A	L	I	I	.	.	.	N	Q	S	I	M	S	Y	L	L	I	A	L
Query Conservation																																																																			.	.	.
Alig confidence													.																																																						.	.	.
Template Conservation													.
Template Sequence		I	T	A	A	I	I	M	Q	I	L	V	.	T	V	V	P	A	L	E	K	L	S	K	E	G	E	E	G	R	R	I	I	N	Q	Y	T	R	I	G	G	I	A	L	G	A	F	Q	G	F	F	L	A	T	A	F	L	G	A	E	G	G	R	F	L	L	P	G	W	S	P	G	P	F	F	W	F	V	V	V	V
Template Known Secondary structure		T	T	T	S	S					T	T	.	T	S	S	T	T							S	S	G	G	G	S																		S					T	T	T	T						S	S	S	B		S	S			T	T
Template Predicted Secondary structure													.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	T	A	G	T	A	F	L	I	W	L	G	D	Q	I	T	Q	F	G	V	G	N	G	I	S	I	I	I	F	A	G	I	L	S	T	L	P	A	S	L	I	Q	F	G	Q	T	A	F	V	G	Q	E	D	T	S	L	A	W	L	K	V	L	G	L	L	V	S	L	I	L	L	T	V	G	A	I	Y	V	L
Query Conservation
Alig confidence																																																								.	.	.	.
Template Conservation																																																								.	.	.	.
Template Sequence		T	Q	V	A	G	I	A	L	L	L	W	M	A	E	R	I	T	E	Y	G	I	G	N	G	T	S	L	I	I	F	A	G	I	V	V	E	W	L	P	Q	I	L	R	T	I	G	L	I	R	T	G	E	V	N	.	.	.	.	L	V	A	F	L	F	F	L	A	F	I	V	L	A	F	A	G	M	A	A	V	Q
Template Known Secondary structure					T	T															S	S	S													T	T	S	S													T	S	S		.	.	.	.	T	T
Template Predicted Secondary structure																																																								.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.					.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	V	R	K	I	P	I	Q	Y	A	K	K	Q	T	A	Q	R	L	G	S	Q	A	T	Y	L	P	L	K	V	N	S	A	G	V	I	P	V	I	F	A	M	A	F	F	L	L	P	R	T	L	T	L	F	Y	P	D	K	E	W	A	Q	N	I	A	N	A	A	N	P	S	S	N	V	G	M	V	V	Y	I
Query Conservation
Alig confidence													.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.
Template Sequence		Q	A	E	R	R	I	P	V	Q	Y	A	.	.	.	.	.	.	R	Y	G	G	Q	A	T	Y	I	P	I	K	L	N	A	A	G	V	I	P	I	I	F	A	A	A	I	L	Q	I	P	I	F	L	A	A	P	F	Q	D	N	P	V	L	Q	G	I	A	N	F	F	N	P	T	R	P	S	G	L	F	I	E	V
Template Known Secondary structure		T			B								.	.	.	.	.	.				S			S				B		S	S	S		S	S										T	T					T	T	T	T		S	S	S	T	T								S		T	T	S
Template Predicted Secondary structure													.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.							.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	I	I	L	F	T	Y	F	Y	A	F	V	Q	V	N	P	E	K	M	A	D	N	L	K	K	Q	G	S	Y	V	P	G	I	R	P	G	E	Q	T	K	K	Y	I	T	K	V	L	Y	R	L	T	F	V	G	S	I	F	L	A	V	I	S	I	L	P	I	L	A	T	K	F	M	G	L	P	Q	S	I	Q
Query Conservation
Alig confidence																																																																														.
Template Conservation																																																																														.
Template Sequence		L	L	V	I	L	F	T	Y	V	Y	T	A	V	Q	F	D	P	K	R	I	A	E	S	L	R	E	Y	G	G	F	I	P	G	I	R	P	G	E	P	T	V	K	F	L	E	H	I	V	S	R	L	T	L	W	G	A	L	F	L	G	L	V	T	L	L	P	Q	I	I	Q	N	L	T	G	I	H	.	S	I	A
Template Known Secondary structure												T	T	T	S	S									T	T	S	S					T	T			S	S	S	T	T	T	T	T	T	T	T	T	T	T	T																				T	T	T	S	S			.		G	G
Template Predicted Secondary structure																																																																														.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.		.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	G	T	S	L	L	I	V	I	G	V	A	I	E	T	M	K	S	L	E	A	Q	V	S	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	S	G	I	G	L	L	I	V	V	G	V	A	L	D	T	L	R	Q	V	E	S	Q	L	M	L	R
Template Known Secondary structure		G	T	T	T	T	T																					.
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.