Job Description O08387 Confidence 100.00% Date Tue Jul 17 17:05:02 BST 2012 Rank 7 Aligned Residues 400 % Identity 19% Template c2wwaA_ PDB info PDB header:ribosome Chain: A: PDB Molecule:sec sixty-one protein homolog; PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the2 yeast 80s ribosome Resolution 8.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	Q	T	L	V	N	F	F	R	T	K	E	V	R	N	K	I	F	F	T	L	A	M	L	V	I	F	K	I	G	T	Y	I	P	A	P	G	V	N	P	A	A	F	D	N	P	Q	G	S	Q	G	A	T	E	L	L	N	T	F	G	G	G	A	L	K	R	F	S	I	F	A	M	G	I	V	P	Y	I	T
Query Conservation
Alig confidence																																	.											.	.	.																			.	.
Template Conservation																																	.											.	.	.																			.	.
Template Sequence		I	L	P	E	V	E	L	P	F	E	K	L	P	F	D	D	K	I	V	Y	T	I	F	A	G	L	I	Y	L	F	A	.	Q	F	P	L	V	G	L	P	K	A	.	.	.	T	T	P	N	V	N	D	P	I	Y	F	L	R	G	V	F	G	C	.	.	E	P	R	T	L	L	E	F	G	L	F	P	N	I	S
Template Known Secondary structure		G	S												S														S	S			.	S	S			S		S	S	S	S	.	.	.	S	S	S		S	S	S			T	T	T					T		.	.		S	S	S	S		S	S	T	T
Template Predicted Secondary structure																																	.											.	.	.																			.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.				.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.			.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	I	V	M	Q	L	L	Q	M	D	I	V	P	K	F	S	E	W	A	K	Q	G	E	V	G	R	R	K	L	N	N	V	T	R	Y	L	A	I	S	L	A	F	I	Q	S	I	G	M	A	F	Q	F	N	N	Y	L	K	G	A	L	I	I	N	Q	S	I	M	S	Y	L	L	I	A	L	V	L	T	A	G
Query Conservation
Alig confidence													.	.	.																																												.	.	.	.	.	.
Template Conservation													.	.	.																																												.	.	.	.	.	.
Template Sequence		S	G	L	I	L	Q	L	L	A	G	L	.	.	.	K	V	I	K	V	N	F	K	I	Q	S	D	R	E	L	F	Q	S	L	T	K	V	F	A	I	V	Q	Y	V	I	L	T	N	I	F	I	F	A	G	Y	F	G	D	.	.	.	.	.	.	D	L	S	V	V	Q	I	G	L	I	N	F	Q	L	V	G	A
Template Known Secondary structure													.	.	.	T	S	S				T	T	S																										T	T	T	T	T	T	T	S		.	.	.	.	.	.			S	T	T											T	T
Template Predicted Secondary structure													.	.	.																																												.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.							.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure															.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	A	F	L	I	W	L	G	D	Q	I	T	Q	.	F	G	V	G	N	G	I	S	I	I	I	F	A	G	I	L	S	T	L	P	A	S	L	I	Q	F	G	Q	T	A	F	V	G	Q	E	D	T	S	L	A	W	L	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation															.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	F	T	T	L	L	A	E	V	I	D	K	G	F	G	F	S	S	G	A	M	I	I	N	T	V	V	I	A	T	N	L	V	A	D	T	F	G	V	S	Q	I	K	V	G	E	D	D	Q	T	E	A	Q	G	A	L	I	N	L	I	Q	G	L	R	S	K	H	K	T	F	I	G	G	I	I	S	A	F	N
Template Known Secondary structure		T												T	T	T	S	S	S								T	T											T									S	S			S	S	S																S	S				S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
								218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure		.	.	.	.	.	.																																																																										.
Query SS confidence		.	.	.	.	.	.																																																																										.
Query Sequence		.	.	.	.	.	.	L	G	L	L	V	S	L	I	L	L	T	V	G	A	I	Y	V	L	E	A	V	R	K	I	P	I	Q	Y	A	K	K	Q	T	A	Q	R	L	G	S	Q	A	T	Y	L	P	L	K	V	N	S	A	G	V	I	P	V	I	F	A	M	A	F	F	L	L	P	R	T	L	T	L	F	Y	.
Query Conservation		.	.	.	.	.	.																																																																										.
Alig confidence		.	.	.	.	.	.																														.	.	.	.	.	.																																							.
Template Conservation																																					.	.	.	.	.	.
Template Sequence		R	D	Y	L	P	N	L	T	T	T	I	I	V	L	A	I	A	I	I	V	C	Y	L	Q	S	V	R	V	E	L	P	I	R	S	T	.	.	.	.	.	.	R	A	R	G	T	N	N	V	Y	P	I	K	L	L	Y	T	G	C	L	S	V	L	F	S	Y	T	I	L	F	Y	I	H	I	F	A	F	V	L	I
Template Known Secondary structure		S	S	S			S															S	S	T	T	T	S									S	.	.	.	.	.	.	S	S	S	S									S	T	T	T	S										G	G	G	T		S	S	S		S	T	T	T
Template Predicted Secondary structure																																					.	.	.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.							.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
									291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.																														.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query SS confidence		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query Sequence		.	.	.	.	.	.	.	P	D	K	E	W	A	Q	N	I	A	N	A	A	N	P	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	G	M	V	V	Y	I	V	L	I	I	L	F	T	Y	F	Y	A	F	V	Q	.	V	N	P	E
Query Conservation		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Alig confidence		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation
Template Sequence		Q	L	V	A	K	N	E	P	T	H	I	I	C	K	I	M	G	H	Y	E	N	A	N	N	L	L	A	V	P	T	F	P	L	S	L	L	A	P	P	T	S	F	F	K	G	V	T	Q	Q	P	L	T	F	I	T	Y	S	A	F	I	L	V	T	G	I	W	F	A	D	K	W	Q	A	I	S	G	S	S	A	R
Template Known Secondary structure							S				S	S	S		T	T	S	B			S			S	S	S	S		S		S	S	B	S			S	S					S	S	B				S		S																	T							S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	M	A	D	N	L	K	K	Q	G	S	Y	V	P	G	I	R	P	G	E	Q	T	K	K	Y	I	T	K	V	L	Y	R	L	T	F	V	G	S	I	F	L	A	V	I	S	I	L	P	I	L	A	T	K	F	M	G	L	P	Q	S	I	Q	I	G	G	T	S	L	L	I	V	I	G	V	A	I	E	T	M	K
Query Conservation
Alig confidence																						.																																			.	.	.	.	.	.	.	.
Template Conservation																						.																																			.	.	.	.	.	.	.	.
Template Sequence		D	V	A	L	E	F	K	D	Q	G	I	T	L	M	G	R	R	E	Q	N	.	V	A	K	E	L	N	K	V	I	P	I	A	A	V	T	G	A	S	V	L	S	L	I	T	V	I	G	E	S	L	G	L	K	G	.	.	.	.	.	.	.	.	K	A	A	G	I	V	V	G	I	A	G	G	F	S	L	L	E
Template Known Secondary structure													S	S	S	S						.	S	T	T	T	T	T	T	T	S					S	G	G	G	T	S												B			S	.	.	.	.	.	.	.	.	S	T	T	T	S	T	T	T	S	S	S	S
Template Predicted Secondary structure																						.																																			.	.	.	.	.	.	.	.
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.		.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.									.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	E	A	Q	V	S	Q	K	E	Y	K	G	F	G	G	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	T	I	E	Y	Q	Q	S	G	G	Q	S	A	L	N	Q
Template Known Secondary structure										T	S	S	S		S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.