Email l.a.kelley@imperial.ac.uk Description O34090 Date Tue Jul 17 17:05:02 BST 2012 Unique Job ID 73b5b93bc6276f95

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ypnA_ 100.0 43 PDB header:transferase Chain: A: PDB Molecule:protein (hydroxymethylbilane synthase); PDBTitle: hydroxymethylbilane synthase 2 c3eq1A_ 100.0 42 PDB header:transferase Chain: A: PDB Molecule:porphobilinogen deaminase; PDBTitle: the crystal structure of human porphobilinogen deaminase at2 2.8a resolution 3 d1pdaa1 100.0 50 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 4 d1gtka2 99.9 33 Fold:dsRBD-like Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 5 d1pdaa2 99.9 35 Fold:dsRBD-like Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 6 c1p99A_ 97.6 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg110; PDBTitle: 1.7a crystal structure of protein pg110 from staphylococcus2 aureus 7 d1p99a_ 97.6 15 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 8 c3gxaA_ 97.4 15 PDB header:protein binding Chain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946 9 c2x26A_ 97.4 14 PDB header:transport protein Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli 10 c3uifA_ 96.9 17 PDB header:transport protein Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt 11 c3tqwA_ 96.9 19 PDB header:transport protein Chain: A: PDB Molecule:methionine-binding protein; PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii 12 c3ir1F_ 96.8 16 PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis 13 c3un6A_ 96.4 12 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein saouhsc_00137; PDBTitle: 2.0 angstrom crystal structure of ligand binding component of abc-type2 import system from staphylococcus aureus with zinc bound 14 d2ozza1 96.0 15 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 15 c3e4rA_ 95.7 17 PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes 16 c3l6gA_ 95.1 10 PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation 17 d1xs5a_ 94.8 16 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 18 c3kzgB_ 94.3 12 PDB header:transport protein Chain: B: PDB Molecule:arginine 3rd transport system periplasmic binding PDBTitle: crystal structure of an arginine 3rd transport system2 periplasmic binding protein from legionella pneumophila 19 c3up9A_ 93.8 16 PDB header:methionine-binding protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative lipoprotein (actodo_00931) from2 actinomyces odontolyticus atcc 17982 at 2.35 a resolution 20 d1zbma1 93.5 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 21 d2czla1 not modelled 91.5 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 22 c3hn0A_ not modelled 91.1 10 PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of an abc transporter (bdi_1369) from2 parabacteroides distasonis at 1.75 a resolution 23 c3tmgA_ not modelled 90.5 12 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi 24 c4ef2A_ not modelled 90.4 21 PDB header:methionine-binding protein Chain: A: PDB Molecule:pheromone cob1/lipoprotein, yaec family; PDBTitle: crystal structure of a pheromone cob1 precursor/lipoprotein, yaec2 family (ef2496) from enterococcus faecalis v583 at 2.10 a resolution 25 c3qslA_ not modelled 89.8 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of cae31940 from bordetella bronchiseptica rb50 26 c3k2dA_ not modelled 88.8 15 PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus 27 c3ix1A_ not modelled 85.0 15 PDB header:biosynthetic protein Chain: A: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans 28 c3ix1B_ not modelled 85.0 15 PDB header:biosynthetic protein Chain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans 29 c3ho7A_ not modelled 84.9 25 PDB header:transcription Chain: A: PDB Molecule:oxyr; PDBTitle: crystal structure of oxyr from porphyromonas gingivalis 30 c2x7pA_ not modelled 84.0 17 PDB header:unknown function Chain: A: PDB Molecule:possible thiamine biosynthesis enzyme; PDBTitle: the conserved candida albicans ca3427 gene product defines a new2 family of proteins exhibiting the generic periplasmic binding3 protein structural fold 31 c2h9bB_ not modelled 82.7 18 PDB header:transcription Chain: B: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: crystal structure of the effector binding domain of a benm variant2 (benm r156h/t157s) 32 c3n6uA_ not modelled 76.8 12 PDB header:transcription regulator Chain: A: PDB Molecule:lysr type regulator of tsambcd; PDBTitle: effector binding domain of tsar in complex with its inducer p-2 toluenesulfonate 33 c3g41A_ not modelled 74.0 15 PDB header:transport protein Chain: A: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding PDBTitle: the structure of cpn0482, the arginine binding protein from the2 periplasm of chlamydia pneumoniae 34 c3delC_ not modelled 73.8 12 PDB header:protein binding, transport protein Chain: C: PDB Molecule:arginine binding protein; PDBTitle: the structure of ct381, the arginine binding protein from the2 periplasm chlamydia trachomatis 35 d2nxoa1 not modelled 73.4 14 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 36 c2q2aD_ not modelled 72.4 12 PDB header:transport protein Chain: D: PDB Molecule:artj; PDBTitle: crystal structures of the arginine-, lysine-, histidine-2 binding protein artj from the thermophilic bacterium3 geobacillus stearothermophilus 37 d1i6aa_ not modelled 70.2 20 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 38 c3fd3A_ not modelled 70.0 13 PDB header:transcription regulator Chain: A: PDB Molecule:chromosome replication initiation inhibitor protein; PDBTitle: structure of the c-terminal domains of a lysr family protein from2 agrobacterium tumefaciens str. c58. 39 d1ixca2 not modelled 67.7 17 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 40 d1ex2a_ not modelled 63.2 17 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:Maf-like 41 c2ylnA_ not modelled 63.1 9 PDB header:transport protein Chain: A: PDB Molecule:putative abc transporter, periplasmic binding protein, PDBTitle: crystal structure of the l-cystine solute receptor of2 neisseria gonorrhoeae in the closed conformation 42 d1zwya1 not modelled 61.7 14 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:YjjX-like 43 d1u5wa1 not modelled 60.9 10 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:YjjX-like 44 d1al3a_ not modelled 60.1 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 45 c1al3A_ not modelled 60.1 13 PDB header:transcription regulation Chain: A: PDB Molecule:cys regulon transcriptional activator cysb; PDBTitle: cofactor binding fragment of cysb from klebsiella aerogenes 46 c2o1mB_ not modelled 57.0 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable amino-acid abc transporter PDBTitle: crystal structure of the probable amino-acid abc2 transporter extracellular-binding protein ytmk from3 bacillus subtilis. northeast structural genomics4 consortium target sr572 47 c2p5xB_ not modelled 56.9 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:n-acetylserotonin o-methyltransferase-like protein; PDBTitle: crystal structure of maf domain of human n-acetylserotonin o-2 methyltransferase-like protein 48 c3hv1A_ not modelled 52.1 10 PDB header:transport protein Chain: A: PDB Molecule:polar amino acid abc uptake transporter substrate PDBTitle: crystal structure of a polar amino acid abc uptake2 transporter substrate binding protein from streptococcus3 thermophilus 49 d2amha1 not modelled 47.6 30 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:Maf-like 50 c1twyG_ not modelled 43.7 18 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:abc transporter, periplasmic substrate-binding protein; PDBTitle: crystal structure of an abc-type phosphate transport receptor from2 vibrio cholerae 51 d1twya_ not modelled 43.7 18 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 52 d1hsla_ not modelled 43.3 17 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 53 c2vd3B_ not modelled 40.4 13 PDB header:transferase Chain: B: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: the structure of histidine inhibited hisg from2 methanobacterium thermoautotrophicum 54 c3n5lA_ not modelled 39.5 13 PDB header:transport protein Chain: A: PDB Molecule:binding protein component of abc phosphonate transporter; PDBTitle: crystal structure of a binding protein component of abc phosphonate2 transporter (pa3383) from pseudomonas aeruginosa at 1.97 a resolution 55 d1lsta_ not modelled 39.2 17 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 56 c3oxnD_ not modelled 38.9 11 PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: the crystal structure of a putative transcriptional regulator from2 vibrio parahaemolyticus 57 c2i4cA_ not modelled 34.4 12 PDB header:transport protein Chain: A: PDB Molecule:bicarbonate transporter; PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium 58 c2pfzA_ not modelled 33.2 13 PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp6, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid 59 c2y7iB_ not modelled 33.2 12 PDB header:arginine-binding protein Chain: B: PDB Molecule:stm4351; PDBTitle: structural basis for high arginine specificity in salmonella2 typhimurium periplasmic binding protein stm4351. 60 c2ieeB_ not modelled 31.0 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable abc transporter extracellular-binding PDBTitle: crystal structure of yckb_bacsu from bacillus subtilis.2 northeast structural genomics consortium target sr574. 61 c3r6uA_ not modelled 30.4 20 PDB header:transport protein Chain: A: PDB Molecule:choline-binding protein; PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis 62 d1zh8a1 not modelled 29.5 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 63 c2uyeA_ not modelled 29.4 13 PDB header:transcription Chain: A: PDB Molecule:regulatory protein; PDBTitle: double mutant y110s,f111v dntr from burkholderia sp. strain2 dnt in complex with thiocyanate 64 d1ni7a_ not modelled 29.3 15 Fold:SufE/NifU Superfamily:SufE/NifU Family:SufE-like 65 c3r39A_ not modelled 28.4 8 PDB header: PDB COMPND: 66 c4eq9A_ not modelled 28.4 14 PDB header:transport protein Chain: A: PDB Molecule:abc transporter substrate-binding protein-amino acid PDBTitle: 1.4 angstrom crystal structure of putative abc transporter substrate-2 binding protein from streptococcus pneumoniae strain canada mdr_19a3 in complex with glutathione 67 c2h9qC_ not modelled 28.2 13 PDB header:transcription Chain: C: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: crystal structure of the effector binding domain of a catm2 variant (r156h) 68 c2ql3G_ not modelled 27.4 13 PDB header:transcription Chain: G: PDB Molecule:probable transcriptional regulator, lysr family protein; PDBTitle: crystal structure of the c-terminal domain of a probable lysr family2 transcriptional regulator from rhodococcus sp. rha1 69 d1tjna_ not modelled 26.7 18 Fold:Chelatase-like Superfamily:Chelatase Family:CbiX-like 70 c1tjnA_ not modelled 26.7 18 PDB header:lyase Chain: A: PDB Molecule:sirohydrochlorin cobaltochelatase; PDBTitle: crystal structure of hypothetical protein af0721 from archaeoglobus2 fulgidus 71 c2f78A_ not modelled 26.3 22 PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: benm effector binding domain with its effector benzoate 72 c2hxrA_ not modelled 25.7 15 PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional regulator cynr; PDBTitle: structure of the ligand binding domain of e. coli cynr, a2 transcriptional regulator controlling cyanate metabolism 73 c2f7cA_ not modelled 25.4 13 PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: catm effector binding domain with its effector cis,cis-muconate 74 c3zu3A_ not modelled 25.1 32 PDB header:oxidoreductase Chain: A: PDB Molecule:putative reductase ypo4104/y4119/yp_4011; PDBTitle: structure of the enoyl-acp reductase fabv from yersinia pestis with2 the cofactor nadh (mr, cleaved histag) 75 d1mzga_ not modelled 23.8 27 Fold:SufE/NifU Superfamily:SufE/NifU Family:SufE-like 76 c3kosA_ not modelled 23.4 20 PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator ampr; PDBTitle: structure of the ampr effector binding domain from citrobacter2 freundii 77 c3onmB_ not modelled 22.6 21 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator lrha; PDBTitle: effector binding domain of lysr-type transcription factor rovm from y.2 pseudotuberculosis 78 c4ab6A_ not modelled 21.8 9 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: regulatory domain structure of nmb2055 (metr), c103s c106s mutant, a2 lysr family regulator from n. meningitidis 79 d1nn4a_ not modelled 21.7 16 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 80 c3cz6A_ not modelled 21.6 13 PDB header:protein binding Chain: A: PDB Molecule:dna-binding protein rap1; PDBTitle: crystal structure of the rap1 c-terminus 81 c3vpjF_ not modelled 21.1 16 PDB header:hydrolase/hydrolase inhibitor Chain: F: PDB Molecule:tse1-specific immunity protein; PDBTitle: crystal structure of type vi effector tse1 from pseudomonas aeruginosa2 in complex with immune protein tsi1 82 c2de4B_ not modelled 21.1 15 PDB header:hydrolase Chain: B: PDB Molecule:dibenzothiophene desulfurization enzyme b; PDBTitle: crystal structure of dszb c27s mutant in complex with biphenyl-2-2 sulfinic acid 83 c1wloA_ not modelled 21.1 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sufe protein; PDBTitle: solution structure of the hypothetical protein from thermus2 thermophilus hb8 84 c3k4uA_ not modelled 20.6 12 PDB header:transport protein Chain: A: PDB Molecule:binding component of abc transporter; PDBTitle: crystal structure of putative binding component of abc transporter2 from wolinella succinogenes dsm 1740 complexed with lysine 85 c3jv9B_ not modelled 20.4 13 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: the structure of a reduced form of oxyr from n. meningitidis 86 c4fgiH_ not modelled 19.8 16 PDB header:hydrolase/hydrolase inhibitor Chain: H: PDB Molecule:tsi1; PDBTitle: structure of the effector - immunity system tse1 / tsi1 from2 pseudomonas aeruginosa 87 c4e14A_ not modelled 18.4 16 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:kynurenine formamidase; PDBTitle: crystal structure of kynurenine formamidase conjugated with2 phenylmethylsulfonyl fluoride 88 d2i6ea1 not modelled 18.1 17 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 89 c2i6eG_ not modelled 18.1 17 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein dr0370 from deinococcus radiodurans, pfam2 duf178 90 c3hhfB_ not modelled 17.3 18 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: structure of crga regulatory domain, a lysr-type transcriptional2 regulator from neisseria meningitidis. 91 c1zy8M_ not modelled 17.2 40 PDB header:oxidoreductase Chain: M: PDB Molecule:pyruvate dehydrogenase protein x component, PDBTitle: the crystal structure of dihydrolipoamide dehydrogenase and2 dihydrolipoamide dehydrogenase-binding protein (didomain)3 subcomplex of human pyruvate dehydrogenase complex. 92 c2f5zK_ not modelled 17.2 40 PDB header:oxidoreductase/protein binding Chain: K: PDB Molecule:pyruvate dehydrogenase protein x component; PDBTitle: crystal structure of human dihydrolipoamide dehydrogenase2 (e3) complexed to the e3-binding domain of human e3-3 binding protein 93 d1vhca_ not modelled 16.4 16 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 94 c3pppA_ not modelled 16.3 13 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein; PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc 95 c3he8A_ not modelled 15.9 26 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b 96 c2wfoA_ not modelled 15.5 19 PDB header:viral protein Chain: A: PDB Molecule:glycoprotein 1; PDBTitle: crystal structure of machupo virus envelope glycoprotein2 gp1 97 c3k6gA_ not modelled 15.3 15 PDB header:protein binding Chain: A: PDB Molecule:telomeric repeat-binding factor 2-interacting protein 1; PDBTitle: crystal structure of rap1 and trf2 complex 98 c3mtjA_ not modelled 14.7 15 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a 99 c2yu3A_ not modelled 14.2 21 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase iii 39 kda PDBTitle: solution structure of the domain swapped wingedhelix in dna-2 directed rna polymerase iii 39 kda polypeptide