Job Description O34090 Confidence 94.79% Date Tue Jul 17 17:05:02 BST 2012 Rank 17 Aligned Residues 199 % Identity 16% Template d1xs5a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.85

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	L	V	V	G	S	R	R	S	K	L	A	L	T	Q	S	Q	Q	F	I	D	K	L	K	A	V	E	P	N	L	E	I	E	I	K	E	I	V	T	K	G	D	R	I	V	D	K	Q	L	S	K	V	G	G	K	G	L	F	V	K	E	I	Q	H	E	L	F	E	K	N	I	D	M	A	I	H	S	L	K
Query Conservation
Alig confidence																	.												.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.												.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	T	V	G	V	G	V	L	S	E	P	H	A	R	L	.	L	E	I	A	K	E	E	V	K	K	Q	.	.	H	I	E	L	R	I	V	E	F	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	V	A	L	N	E	A	V	M	R	G	D	I	L	M	N	F	F	Q	H	V
Template Known Secondary structure										S	T	T					.										T	T	.	.	T									S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	S	S	S
Template Predicted Secondary structure																	.												.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.																				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
		82	.	.	.	.	.	.	.			90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.					.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.																																					.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.																																					.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	V	P	S	V	I	P	E	.	.	G	L	T	L	G	C	I	P	D	R	E	L	P	F	D	A	Y	I	S	K	T	H	T	P	L	S	Q	L	P	E	G	S	I	I	G	T	.	.	.	.	S	S	L	R	R	G	A	Q	I	L	S	K	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.	.																																					.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.																																					.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	H	M	Q	Q	F	N	Q	E	H	N	G	D	L	V	S	V	G	N	V	H	V	E	P	L	A	L	Y	S	R	T	Y	R	H	V	S	D	F	P	A	G	A	V	I	A	I	P	N	D	S	S	N	E	A	R	A	L	R	L	L	E	A	A	G	F	I	R	M	R	A	G	S	G	L	F	A	T	V	E	D
Template Known Secondary structure												T																			S	S			S	G	G	G			T	T								S														T	T	S					T	T			T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
								140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	N	L	E	I	K	W	I	R	G	N	I	D	T	R	L	E	K	L	Q	T	E	D	Y	D	A	I	I	L	A	A	A	G	L	R	R	M	G	W	S	D	D	I	V	T	S	Y	L	D	R	D	T	L	L	P	A	I	G	Q	G	A	L	G	I	E	C	R	S	D	D	E	E	L	L	T
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																	.	.	.	.																																					.	.
Template Conservation																								.	.	.	.																																					.	.
Template Sequence		V	Q	Q	N	V	R	N	V	V	L	Q	E	V	E	S	A	L	L	P	R	V	F	.	.	.	.	D	Q	V	D	G	A	V	I	N	G	N	Y	A	I	M	A	G	L	S	A	R	R	D	G	L	A	V	E	P	D	A	S	A	Y	A	N	.	.	V	L	V	V	K	R	G	N	E	A	D	A	R	V	Q	A
Template Known Secondary structure						T	T									G	G	G					G	.	.	.	.	G	G	S	S												T	T			T	T	T	T		S				S		G	G	G	G			.	.						T	T		T	T
Template Predicted Secondary structure																								.	.	.	.																																					.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	S	K	V	H	N	D	E	V	A	K	C	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	R	A	L	C	G	G	R	V	R	T	Y	L	K
Template Known Secondary structure							T	S
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions