Job Description O34090 Confidence 90.40% Date Tue Jul 17 17:05:02 BST 2012 Rank 24 Aligned Residues 198 % Identity 21% Template c4ef2A_ PDB info PDB header:methionine-binding protein Chain: A: PDB Molecule:pheromone cob1/lipoprotein, yaec family; PDBTitle: crystal structure of a pheromone cob1 precursor/lipoprotein, yaec2 family (ef2496) from enterococcus faecalis v583 at 2.10 a resolution Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	K	L	V	V	G	S	R	R	S	K	L	A	L	T	Q	S	Q	Q	F	I	D	K	L	K	A	V	E	P	N	L	E	I	E	I	K	E	I	V	T	K	G	D	R	I	V	D	K	Q	L	S	K	V	G	G	K	G	L	F	V	K	E	I	Q	H	E	L	F	E	K	N	I	D	M	A	I	H	S	L
Query Conservation
Alig confidence																			.											.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation																			.											.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Sequence		D	S	V	L	K	V	G	A	S	P	V	P	H	A	E	I	L	.	E	H	V	K	P	L	L	E	K	E	.	.	G	V	K	L	E	V	T	T	Y	T	D	Y	V	L	P	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	E	S	G	D	I	D	A	N	Y	F	Q	.
Template Known Secondary structure		T	T								T	T	T						.										T	.	.	T									S	S	S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S		S						.
Template Predicted Secondary structure																			.											.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.																				.	.	.	.	.	.	.	80	.	.	.	.	.
		81	.	.	.	.	.	.					.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.																																								.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.																																								.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	D	V	P	S	V	I	.	.	.	.	P	E	G	L	T	L	G	C	I	P	D	R	E	L	P	F	D	A	Y	I	S	K	T	H	T	P	L	S	Q	L	P	E	G	S	I	I	G	T	S	.	.	S	L	R	R	G	A	Q	I	L	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation									.	.	.	.																																								.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.							.	.	.	.																																								.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	H	V	P	F	F	N	E	A	V	K	E	N	D	Y	D	F	V	N	A	G	A	I	H	L	E	P	V	G	L	Y	S	K	K	Y	K	S	L	Q	E	I	P	D	G	S	T	I	Y	V	S	S	S	V	S	D	W	P	R	V	L	T	I	L	E	D	A	G	L	I	T	L	K	E	G	V	D	R	T	T	A
Template Known Secondary structure		.													T																			S	S		S	S	G	G	G			T	T							S		G	G	G											T	T	S					T	T			G	G	G
Template Predicted Secondary structure		.
Template SS confidence
			86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
										138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																																																					.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																																																					.	.	.
Query Sequence		.	.	.	.	.	.	.	.	Y	P	N	L	E	I	K	W	I	R	G	N	I	D	T	R	L	E	K	L	Q	T	E	D	Y	D	A	I	I	L	A	A	A	G	L	R	R	M	G	W	S	D	D	I	V	T	S	Y	L	D	R	D	T	L	L	P	A	I	G	Q	G	A	L	G	I	E	C	R	.	.	.	S
Query Conservation		.	.	.	.	.	.	.	.																																																																					.	.	.
Alig confidence		.	.	.	.	.	.	.	.																			.																														.	.	.	.	.																.	.	.
Template Conservation																												.																														.	.	.	.	.
Template Sequence		T	F	D	D	I	D	K	N	T	K	K	L	K	F	N	H	E	S	D	P	A	I	X	T	T	L	.	Y	D	N	E	E	G	A	A	V	L	I	N	S	N	F	A	V	D	Q	G	L	N	P	K	K	D	A	I	A	.	.	.	.	.	L	E	K	E	S	S	P	Y	A	N	I	I	A	V	R	K	E	D	E
Template Known Secondary structure			G	G	G					T	T										G	G	G					.			T	T		S	S												T	T								S		.	.	.	.	.			S			G	G	G								G	G	G	T
Template Predicted Secondary structure																												.																														.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.						220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	E	E	L	L	T	L	L	S	K	V	H	N	D	E	V	A	K	C	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	N	E	N	V	K	K	L	V	K	V	L	R	S	K	E	V	Q	D	W	I	T
Template Known Secondary structure		T													S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions