Job Description O34090 Confidence 21.80% Date Tue Jul 17 17:05:02 BST 2012 Rank 78 Aligned Residues 147 % Identity 9% Template c4ab6A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: regulatory domain structure of nmb2055 (metr), c103s c106s mutant, a2 lysr family regulator from n. meningitidis Resolution 2.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	V	V	G	S	R	R	S	K	L	A	L	T	Q	S	Q	Q	F	I	D	K	L	K	A	V	E	P	N	L	E	I	E	I	K	E	I	V	T	K	G	D	R	I	V	D	K	Q	L	S	K	V	G	G	K	G	L	F	V	K	E	I	Q	H	E	L	F	E	K	N	I	D	M	A	I	H	S	L	K	D
Query Conservation
Alig confidence											.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	R	I	A	V	E	S	H	.	T	S	F	D	W	L	M	P	A	M	G	E	F	R	P	M	W	P	Q	V	E	L	D	I	V	S	G	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	V	G	L	L	L	Q	H	R	A	D	L	A	I	V	S	E	A	E	K
Template Known Secondary structure								S		G	.	G	G																T	T	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	S		S					S
Template Predicted Secondary structure											.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.																					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.					.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.
Query SS confidence																																											.	.	.	.
Query Sequence		V	P	S	V	I	P	E	G	L	T	L	G	C	I	P	D	R	E	L	P	F	D	A	Y	I	S	K	T	H	T	P	L	S	Q	L	P	E	G	S	I	I	.	.	.	.	G	T	S	S	L	R	R	G	A	Q	I	L	S	K	Y	P	N	L	E	I	K	W	I	R	G	N	I	D	T	R	L	E	K	L	Q
Query Conservation																																											.	.	.	.
Alig confidence																																											.	.	.	.
Template Conservation
Template Sequence		Q	N	G	I	S	F	Q	P	L	F	A	Y	E	M	V	G	I	C	A	P	D	H	P	L	A	A	K	N	V	W	T	A	E	D	F	I	G	E	T	L	I	T	Y	P	V	P	D	E	M	L	D	L	P	K	K	I	L	I	P	K	N	I	N	P	P	R	R	H	S	E	L	T	I	A	I	I	Q	L	V	A
Template Known Secondary structure			T	T																	T	T	S	T	T	T	T		S				G	G	G	G	T	T	S						S	S		G	G	G							T	T	G	G	G	T									S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	D	Y	D	A	I	I	L	A	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	R	R	G	I	A	A	L	P	Y	W	T
Template Known Secondary structure		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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