Job Description O34090 Confidence 96.91% Date Tue Jul 17 17:05:02 BST 2012 Rank 10 Aligned Residues 145 % Identity 17% Template c3uifA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt Resolution 2.60 Å

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		2	.	.	.	.	.	.											.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.
Query Sequence		R	K	L	V	V	G	S	.	.	.	.	.	.	.	.	.	.	R	R	S	K	L	A	L	T	Q	S	Q	Q	F	I	D	K	L	K	A	V	E	P	N	L	E	I	E	I	K	E	I	V	T	K	G	D	R	I	V	D	K	Q	L	S	K	V	G	G	K	G	L	F	V	K	E	I	Q	H	E	L	F	E	K
Query Conservation									.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.																					.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	V	R	I	A	S	V	A	T	N	V	G	G	K	T	V	Y	A	G	S	A	S	L	V	V	N	G	A	F	P	E	E	L	R	K	Q	.	.	G	I	K	V	E	W	V	P	A	A	X	A	S	V	G	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	N	E	G	F	A	S	G
Template Known Secondary structure														T	T						T								S	S								T	.	.	T										T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T
Template Predicted Secondary structure																																							.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.																	.	.	.	.	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.									.	.
Predicted Secondary structure																					.	.																					.	.																												.	.	.	.	.	.	.	.
Query SS confidence																					.	.																					.	.																												.	.	.	.	.	.	.	.
Query Sequence		N	I	D	M	A	I	H	S	L	K	D	V	P	S	V	I	P	E	G	.	.	L	T	L	G	C	I	P	D	R	E	L	P	F	D	A	Y	I	S	K	T	.	.	H	T	P	L	S	Q	L	P	E	G	S	I	I	G	T	S	S	L	R	R	G	A	Q	I	L	S	K	.	.	.	.	.	.	.	.	Y	P
Query Conservation																					.	.																					.	.																												.	.	.	.	.	.	.	.
Alig confidence																					.	.																					.	.								.																				.	.	.	.	.	.	.	.
Template Conservation																																																				.
Template Sequence		K	I	D	F	G	I	Y	G	D	L	P	P	I	I	L	N	A	S	K	P	T	V	Q	L	V	A	P	W	G	T	T	S	N	S	Y	L	V	V	P	K	N	S	T	A	K	S	I	K	D	L	.	K	G	K	K	I	A	L	H	R	G	R	P	W	E	L	A	F	S	N	L	L	Q	S	E	G	L	T	F	K
Template Known Secondary structure										S										S																					T	T					S	G	G	G	G	.	T	T	S						T	T	S	T												T	T			G	G
Template Predicted Secondary structure																																																				.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	E	I	K	W	I	R	G	N	I	D	T	R	L	E	K	L	Q	T	E	D	Y	D	A	I	I	L
Query Conservation
Alig confidence									.	.
Template Conservation									.	.
Template Sequence		D	F	K	I	V	N	V	.	.	N	P	Q	V	G	A	A	A	L	A	S	G	T	V	D	G	F	F	S
Template Known Secondary structure		G	S						.	.												T	S	S	S
Template Predicted Secondary structure									.	.
Template SS confidence
		169	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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