Job Description O34090 Confidence 90.45% Date Tue Jul 17 17:05:02 BST 2012 Rank 23 Aligned Residues 203 % Identity 12% Template c3tmgA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	K	L	V	V	G	S	R	R	S	K	L	A	L	T	Q	S	Q	Q	F	I	D	K	L	K	A	V	E	P	N	L	E	I	E	I	K	E	I	V	T	K	G	D	R	I	V	D	K	Q	L	S	K	V	G	G	K	G	L	F	V	K	E	I	Q	H	E	L	F	E	K	N	I	D	M	A	I	H	S	L
Query Conservation
Alig confidence																														.	.										.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.										.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	S	V	K	I	G	Y	V	N	W	G	G	E	T	A	A	T	N	V	L	K	V	V	F	E	K	M	.	.	G	Y	N	A	E	I	F	S	V	.	T	T	S	I	M	Y	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	A	S	G	K	I	D	G	T	V	S	S	W
Template Known Secondary structure																													T	.	.	T									.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S	S	S
Template Predicted Secondary structure																														.	.										.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.																				.	70	.	.	.	.	.	.	.	.	.	80	.	.
		81	.	.	.	.	.	.						.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.							.	120	.	.	.	.	.	.	.								.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure									.	.	.	.	.																									.	.								.	.	.	.	.	.										.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.																									.	.								.	.	.	.	.	.										.	.	.	.	.	.	.
Query Sequence		K	D	V	P	S	V	I	.	.	.	.	.	P	E	G	L	T	L	G	C	I	P	D	R	E	L	P	F	D	A	Y	I	S	K	T	H	.	.	T	P	L	S	Q	L	P	.	.	.	.	.	.	E	G	S	I	I	G	T	S	S	.	.	.	.	.	.	.	L	R	R	G	A	Q	I	L	S	K	Y	P	N
Query Conservation									.	.	.	.	.																									.	.								.	.	.	.	.	.										.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.																									.	.								.	.	.	.	.	.										.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	P	T	A	D	K	F	Y	Y	E	K	L	K	T	K	F	V	D	L	G	A	N	Y	E	G	T	I	Q	G	F	V	V	P	S	Y	V	P	I	S	S	I	S	E	L	K	G	K	G	D	K	F	K	N	K	M	I	G	I	D	A	G	A	G	T	Q	I	V	T	E	Q	A	L	N	Y	Y	G	L	S	K	E
Template Known Secondary structure			T	T	T	T								G	G	G																			T	T	S				B	G	G	G	G	T	T		G	G	G	G	T	T						S	T	T														T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		141	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.				.	.	.	210	.	.	.
Predicted Secondary structure								.	.																						.	.																																								.	.	.
Query SS confidence								.	.																						.	.																																								.	.	.
Query Sequence		L	E	I	K	W	I	.	.	R	G	N	I	D	T	R	L	E	K	L	Q	T	E	D	Y	D	A	I	I	L	.	.	A	A	A	G	L	R	R	M	G	W	S	D	D	I	V	T	S	Y	L	D	R	D	T	L	L	P	A	I	G	Q	G	A	L	G	I	E	C	R	S	.	.	.	D	D	E	E	L	L	T
Query Conservation								.	.																						.	.																																								.	.	.
Alig confidence								.	.																						.	.											.	.	.	.	.	.																								.	.	.
Template Conservation																																											.	.	.	.	.	.
Template Sequence		Y	E	L	V	P	S	S	E	S	V	M	L	A	S	L	D	S	S	I	K	R	N	E	W	I	L	V	P	L	W	K	P	H	W	A	F	S	R	Y	D	I	.	.	.	.	.	.	K	F	L	D	D	P	D	L	I	M	G	G	I	E	S	V	H	T	L	V	R	L	G	L	E	N	D	D	F	D	A	Y	Y
Template Known Secondary structure		S																				T	T										S		T					S			.	.	.	.	.	.				B		T	T		T	T		S	S									T	T
Template Predicted Secondary structure																																											.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.							.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	S	K	V	H	N	D	E	V	A	K	C	V	T	A	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	F	D	H	F	Y	W	S	D	D	L	I	L	P	L	M	D	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions