Job Description O34090 Confidence 95.14% Date Tue Jul 17 17:05:02 BST 2012 Rank 16 Aligned Residues 144 % Identity 10% Template c3l6gA_ PDB info PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	L	V	V	G	S	R	R	S	K	L	A	L	T	Q	S	Q	Q	F	I	D	K	L	K	A	V	E	P	N	L	E	I	E	I	K	E	I	V	T	K	G	D	R	I	V	D	K	Q	L	S	K	V	G	G	K	G	L	F	V	K	E	I	Q	H	E	L	F	E	K	N	I	D	M	A	I	H	S	L	K
Query Conservation
Alig confidence																													.	.										.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.										.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	V	D	L	V	Y	M	N	W	D	S	E	V	A	S	I	N	V	L	T	Q	A	M	K	E	H	.	.	G	F	D	V	K	T	T	A	L	.	D	N	A	V	A	W	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	A	N	G	Q	A	D	G	M	V	S	A	W	L
Template Known Secondary structure										S																		T	.	.	T									.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S	S	S
Template Predicted Secondary structure																													.	.										.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.																				.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		82	.	.	.	.	.						.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.				.	120	.	.	.	.	.	.						.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.																									.	.								.	.	.									.	.	.	.	.
Query SS confidence								.	.	.	.	.																									.	.								.	.	.									.	.	.	.	.
Query Sequence		D	V	P	S	V	I	.	.	.	.	.	P	E	G	L	T	L	G	C	I	P	D	R	E	L	P	F	D	A	Y	I	S	K	T	H	.	.	T	P	L	S	Q	L	P	.	.	.	E	G	S	I	I	G	T	S	.	.	.	.	.	S	L	R	R	G	A	Q	I	L	S	K	Y	P	N	L	E	I	K	W	I
Query Conservation								.	.	.	.	.																									.	.								.	.	.									.	.	.	.	.
Alig confidence								.	.	.	.	.																									.	.								.	.	.									.	.	.	.	.
Template Conservation
Template Sequence		P	N	T	H	K	T	Q	W	Q	K	Y	G	K	S	V	D	L	L	G	P	N	L	K	G	A	K	V	G	F	V	V	P	S	Y	M	N	V	N	S	I	E	D	L	T	N	Q	A	N	K	T	I	T	G	I	E	P	G	A	G	V	M	A	A	S	E	K	T	L	N	S	Y	D	N	L	K	D	W	K	L	V
Template Known Secondary structure		T	T	T	T								G	G	G																			T	T	S				B	G	G	G		S	S	G	G	G	G							T	T												T	T		G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.					.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.
Query SS confidence										.	.	.	.
Query Sequence		R	G	N	I	D	T	R	L	.	.	.	.	E	K	L	Q	T	E	D	Y	D	A	I	I	L
Query Conservation										.	.	.	.
Alig confidence										.	.	.	.
Template Conservation
Template Sequence		P	S	S	S	G	A	M	T	V	A	L	G	E	A	I	K	Q	H	K	D	I	V	I	T	G
Template Known Secondary structure																		T	T
Template Predicted Secondary structure
Template SS confidence
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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