Job Description O34090 Confidence 88.83% Date Tue Jul 17 17:05:02 BST 2012 Rank 26 Aligned Residues 192 % Identity 15% Template c3k2dA_ PDB info PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		R	K	L	V	V	G	S	R	R	S	K	L	A	L	T	Q	S	Q	Q	F	I	D	K	L	K	A	V	E	P	N	L	E	I	E	I	K	E	I	V	T	K	G	D	R	I	V	D	K	Q	L	S	K	V	G	G	K	G	L	F	V	K	E	I	Q	H	E	L	F	E	K	N	I	D	M	A	I	H	S	L	.
Query Conservation																																																																																	.
Alig confidence																													.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.																			.
Template Conservation																													.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Template Sequence		S	K	V	K	V	G	V	M	A	G	A	E	A	Q	V	A	E	V	A	A	K	V	A	K	E	K	Y	.	.	G	L	D	V	E	L	V	T	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	Y	V	.	T	P	N	A	A	L	D	D	G	S	I	D	M	N	A	F	Q	H	K
Template Known Secondary structure										T	T																		.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		T	T	.	S								T	S		S
Template Predicted Secondary structure																													.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.																			.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
											81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	K	D	V	P	S	V	I	P	E	G	L	T	L	G	C	I	P	D	R	E	L	P	F	D	A	Y	I	S	K	T	H	T	P	L	S	Q	L	P	E	G	S	I	I	G	T	S	S	L	R	R	G	A	Q	I	L	S	K	Y	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.
Template Sequence		P	Y	L	D	R	Q	V	E	D	R	D	Y	K	.	.	.	.	.	.	.	.	L	T	I	A	G	N	T	F	V	Y	P	I	A	G	Y	S	K	Q	V	K	S	V	A	A	L	A	D	G	V	R	I	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	E	Q	Q	G	L	I	K	L	R	P	E	V
Template Known Secondary structure															.	.	.	.	.	.	.	.																	S	S		S		S	T	T			T	T								S														T	T	S					T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.									.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
															139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	L	E	I	K	W	I	R	G	N	I	D	T	R	L	E	K	L	Q	T	E	D	Y	D	A	I	I	L	A	A	A	G	L	R	R	M	G	W	S	D	D	I	V	T	S	Y	L	D	R	D	T	L	L	P	A	I	G	Q	G	A	L	G	I	E	C	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.																			.	.
Template Conservation																																.	.	.	.																			.	.
Template Sequence		G	L	L	A	T	V	R	D	I	V	E	N	P	K	N	I	T	I	M	E	L	D	A	A	Q	L	P	R	S	L	.	.	.	.	D	D	V	A	L	S	I	I	N	T	T	Y	A	S	S	I	N	L	.	.	T	P	E	K	D	G	V	F	V	E	D	K	E	S	P	Y	V	N	L	I	V	A	R	Q	D	N
Template Known Secondary structure			S	S			G	G	G					T	T									G	G	G					T	.	.	.	.	T	T	S	S										G	G	G	T		.	.							S					S	S	S	S									T	T	T
Template Predicted Secondary structure																																.	.	.	.																			.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.					.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	D	E	E	L	L	T	L	L	S	K	V	H	N	D	E	V	A	K	C	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	N	E	N	V	Q	N	F	V	K	A	Y	Q	T	E	E	V	Y	T	A	A	K
Template Known Secondary structure		T	T	S											T	S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions