Job Description O34090 Confidence 85.00% Date Tue Jul 17 17:05:02 BST 2012 Rank 28 Aligned Residues 161 % Identity 15% Template c3ix1B_ PDB info PDB header:biosynthetic protein Chain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.								.	.	130	.
Predicted Secondary structure																														.	.																						.	.																	.	.	.	.	.	.	.
Query SS confidence																														.	.																						.	.																	.	.	.	.	.	.	.
Query Sequence		E	I	Q	H	E	L	F	E	K	N	I	D	M	A	I	H	S	L	K	D	V	P	S	V	I	P	E	G	.	.	L	T	L	G	C	I	P	D	R	E	L	P	F	D	A	Y	I	S	K	T	H	.	.	T	P	L	S	Q	L	P	E	G	S	I	I	G	T	S	S	.	.	.	.	.	.	.	L	R	R	G
Query Conservation																														.	.																						.	.																	.	.	.	.	.	.	.
Alig confidence																														.	.																						.	.							.										.	.	.	.	.	.	.
Template Conservation																																																													.
Template Sequence		D	P	I	Q	L	T	A	S	G	A	I	P	L	A	L	S	Y	Q	P	D	V	I	L	A	R	S	K	D	L	P	V	V	S	V	A	S	V	V	R	S	P	L	N	H	V	M	F	L	A	E	Q	D	F	D	S	P	A	D	L	.	V	G	L	T	V	G	Y	P	G	I	P	V	N	E	P	I	L	K	T	M
Template Known Secondary structure									T	T	S		S															T	T												S			B						T	T	T			S	S	G	G	G	G	.	T	T	S						S		T	T
Template Predicted Secondary structure																																																													.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		132	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.						.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure									.																															.	.	.	.	.																																				.	.
Query SS confidence									.																															.	.	.	.	.																																				.	.
Query Sequence		A	Q	I	L	S	K	Y	.	P	N	L	E	I	K	W	I	R	G	N	I	D	T	R	L	E	K	L	Q	T	E	D	Y	D	A	I	I	L	A	.	.	.	.	.	A	A	G	L	R	R	M	G	W	S	D	D	I	V	T	S	Y	L	D	R	D	T	L	L	P	A	I	G	Q	G	A	L	G	I	E	.	.
Query Conservation									.																															.	.	.	.	.																																				.	.
Alig confidence									.													.	.	.																.	.	.	.	.														.	.	.																				.	.
Template Conservation																						.	.	.																																		.	.	.
Template Sequence		V	E	A	A	G	G	D	Y	E	Q	V	H	L	M	D	V	G	F	E	L	.	.	.	G	A	S	I	V	S	G	R	A	D	A	V	V	G	T	Y	I	N	H	E	Y	P	V	L	K	H	E	G	H	D	I	S	Y	.	.	.	F	N	P	V	D	Y	G	V	P	E	Y	D	E	L	V	L	I	S	N	E	A
Template Known Secondary structure					T	T			G	G	G							T	T			.	.	.						T	T	S		S				S		B	T	T	T								T	T						.	.	.			G	G	G	T	T						S
Template Predicted Secondary structure																						.	.	.																																		.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.				.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
			204	.	.	.	.	.	210	.	.	.	.	.	.	.	.									.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure		.																.	.	.	.	.	.	.	.
Query SS confidence		.																.	.	.	.	.	.	.	.
Query Sequence		.	C	R	S	D	D	E	E	L	L	T	L	L	S	K	V	.	.	.	.	.	.	.	.	H	N	D	E	V	A	K	C	V	T	A	E
Query Conservation		.																.	.	.	.	.	.	.	.
Alig confidence		.																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	V	E	E	S	G	E	V	L	A	A	F	W	R	A	A	L	K	G	Y	E	W	M	V	E	N	P	D	E	A	L	N	V	L	L	T
Template Known Secondary structure																											S
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions