Job Description O34090 Confidence 96.82% Date Tue Jul 17 17:05:02 BST 2012 Rank 12 Aligned Residues 193 % Identity 16% Template c3ir1F_ PDB info PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis Resolution 2.15 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		R	K	L	V	V	G	S	R	R	S	K	L	A	L	T	Q	S	Q	Q	F	I	D	K	L	K	A	V	E	P	N	L	E	I	E	I	K	E	I	V	T	K	G	D	R	I	V	D	K	Q	L	S	K	V	G	G	K	G	L	F	V	K	E	I	Q	H	E	L	F	E	K	N	I	D	M	A	I	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																													.	.												.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Template Conservation																													.	.												.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	E	I	V	F	G	T	T	V	G	D	F	G	D	M	V	K	E	Q	I	Q	P	E	L	E	K	K	.	.	G	Y	T	V	K	L	V	E	F	T	D	.	Y	V	R	P	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	A	E	G	E	L	D	I	N	V	F	Q	H	K
Template Known Secondary structure										S	S									T							T	T	.	.	T									S	S	.	S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	S		S
Template Predicted Secondary structure																													.	.												.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.																			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.						.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	S	L	K	D	V	P	S	V	I	P	E	G	L	T	L	G	C	I	P	D	R	E	L	P	F	D	A	Y	I	S	K	T	H	T	P	L	S	Q	L	P	E	G	S	I	I	G	T	.	.	.	.	.	S	S	L	R	R	G	A	Q	I	L	S	K	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																		.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.																							.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.
Template Sequence		P	Y	L	D	D	F	K	K	E	H	N	L	D	I	T	E	V	F	Q	V	P	T	A	P	.	.	L	G	L	Y	P	G	K	L	K	S	L	E	E	V	K	D	G	S	T	V	S	A	P	N	D	P	S	N	F	A	R	V	L	V	M	L	D	E	L	G	W	I	K	L	K	D	G	I	N	P	L	T	A	S
Template Known Secondary structure																							B			.	.						S	S	S		S	T	T	S			T	T								S														T	T	S	S				T	T	S		G	G	G
Template Predicted Secondary structure																										.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
										139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																																																				.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																																																				.	.	.
Query Sequence		.	.	.	.	.	.	.	.	P	N	L	E	I	K	W	I	R	G	N	I	D	T	R	L	E	K	L	Q	T	E	D	Y	D	A	I	I	L	A	A	A	G	L	R	R	M	G	W	S	D	D	I	V	T	S	Y	L	D	R	D	T	L	L	P	A	I	G	Q	G	A	L	G	I	E	C	R	.	.	.	S	D
Query Conservation		.	.	.	.	.	.	.	.																																																																				.	.	.
Alig confidence		.	.	.	.	.	.	.	.																		.	.	.	.																						.	.	.														.	.	.	.						.	.	.
Template Conservation																											.	.	.	.																						.	.	.														.	.	.	.
Template Sequence		K	A	D	I	A	E	N	L	K	N	I	K	I	V	E	L	E	A	A	Q	L	P	R	S	R	.	.	.	.	A	D	V	D	F	A	V	V	N	G	N	Y	A	I	S	S	G	M	K	L	T	.	.	.	E	A	L	F	Q	E	P	S	F	A	Y	V	N	.	.	.	.	W	S	A	V	K	T	A	D	K	D
Template Known Secondary structure		G	G	G					T	T									G	G	G					G	.	.	.	.	G	G	S	S												T	T			G	G	.	.	.	G		S						S	T	T			.	.	.	.						G	G	G	T	T
Template Predicted Secondary structure																											.	.	.	.																						.	.	.														.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.	.					.	240	.	.	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	E	L	L	T	L	L	S	K	V	H	N	D	E	V	A	K	C	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Q	W	L	K	D	V	T	E	A	Y	N	S	D	A	F	K	A	Y	A	H
Template Known Secondary structure												T	S	S
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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