Job Description O34090 Confidence 100.00% Date Tue Jul 17 17:05:02 BST 2012 Rank 2 Aligned Residues 282 % Identity 42% Template c3eq1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:porphobilinogen deaminase; PDBTitle: the crystal structure of human porphobilinogen deaminase at2 2.8a resolution Resolution 2.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	L	V	V	G	S	R	R	S	K	L	A	L	T	Q	S	Q	Q	F	I	D	K	L	K	A	V	E	P	N	L	E	I	E	I	K	E	I	V	T	K	G	D	R	I	V	D	K	Q	L	S	K	V	G	G	K	G	L	F	V	K	E	I	Q	H	E	L	F	E	K	N	I	D	M	A	I	H	S	L	K
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	I	R	V	G	T	R	K	S	Q	L	A	R	I	Q	T	D	S	V	V	A	T	L	K	A	S	Y	P	G	L	Q	F	E	I	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	K	E	L	E	H	A	L	E	K	N	E	V	D	L	V	V	H	S	L	K
Template Known Secondary structure										S	S																		S	T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T	S		S						G	G
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.																						.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.																																																	.
Query SS confidence																														.	.	.																																																	.
Query Sequence		D	V	P	S	V	I	P	E	G	L	T	L	G	C	I	P	D	R	E	L	P	F	D	A	Y	I	S	K	.	.	.	T	H	T	P	L	S	Q	L	P	E	G	S	I	I	G	T	S	S	L	R	R	G	A	Q	I	L	S	K	Y	P	N	L	E	I	K	W	I	R	G	N	I	D	T	R	L	E	K	L	.
Query Conservation																														.	.	.																																																	.
Alig confidence																														.	.	.																																																	.
Template Conservation
Template Sequence		D	L	P	T	V	L	P	P	G	F	T	I	G	A	I	C	K	R	E	N	P	H	D	A	V	V	F	H	P	K	F	V	G	K	T	L	E	T	L	P	E	K	S	V	V	G	T	S	S	L	R	R	A	A	Q	L	Q	R	K	F	P	H	L	E	F	R	S	I	Q	G	N	L	N	T	R	L	R	K	L	D
Template Known Secondary structure		G	S		S	S			T	T																				G	G	G	T	T			G	G	G	S		T	T																			T	T	S							S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	E	D	Y	D	A	I	I	L	A	A	A	G	L	R	R	M	G	W	S	D	D	I	V	T	S	Y	L	D	R	D	T	L	L	P	A	I	G	Q	G	A	L	G	I	E	C	R	S	D	D	E	E	L	L	T	L	L	S	K	V	H	N	D	E	V	A	K	C	V	T	A	E	R	T	F	L	A	E	M
Query Conservation
Alig confidence																										.
Template Conservation																										.
Template Sequence		E	Q	Q	E	F	S	A	I	I	L	A	T	A	G	L	Q	R	M	G	W	H	N	R	V	.	G	Q	I	L	H	P	E	E	C	M	Y	A	V	G	Q	G	A	L	G	V	E	V	R	A	K	D	Q	D	I	L	D	L	V	G	V	L	H	D	P	E	T	L	L	R	C	I	A	E	R	A	F	L	R	H	L
Template Known Secondary structure		T	S	S	S		S													T		G	G	G		.						T	T	T			B		T	T	T	T								T	T									G	G	G																			T
Template Predicted Secondary structure																										.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.																											.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	G	S	C	Q	V	P	I	A	G	Y	A	T	I	S	D	Q	N	E	I	E	F	T	G	L	I	M	T	P	D	G	K	E	R	F	E	Y	T	M	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	P	V	E	L	G	K	T	V	S	N	K
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.
Template Sequence		E	G	G	C	S	V	P	V	A	V	H	T	A	M	.	K	D	G	Q	L	Y	L	T	G	G	V	W	S	L	D	G	S	D	S	I	Q	E	T	M	Q	A	T	I	H	V	P	Q	H	E	D	D	P	Q	L	V	G	I	T	A	R	N	I	P	R	G	P	Q	L	A	A	Q	N	L	G	I	S	L	A	N	L
Template Known Secondary structure		T			T	T	S	S								.		T	T											T	T	S	S	S																					B	T	T	B			T	T	S
Template Predicted Secondary structure																.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	E	Q	G	A	Y	E	I	I	K	R	L	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	S	K	G	A	K	N	I	L	D	V	A	R	Q
Template Known Secondary structure				T	T	T
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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