Job Description O34090 Confidence 95.66% Date Tue Jul 17 17:05:02 BST 2012 Rank 15 Aligned Residues 145 % Identity 17% Template c3e4rA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes Resolution 2.01 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	K	L	V	V	G	S	R	R	S	K	L	A	L	T	Q	S	Q	Q	F	I	D	K	L	K	A	V	E	P	N	L	E	I	E	I	K	E	I	V	T	K	G	D	R	I	V	D	K	Q	L	S	K	V	G	G	K	G	L	F	V	K	E	I	Q	H	E	L	F	E	K	N	I	D	M	A	I	H	S	L
Query Conservation
Alig confidence																							.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	A	Q	L	R	I	G	Y	Q	K	A	V	S	S	L	V	L	A	K	Q	H	.	R	L	L	E	Q	R	F	P	R	T	K	I	T	W	V	E	F	P	A	G	P	Q	L	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	N	V	G	S	I	D	L	G	G	A	G	D
Template Known Secondary structure			S								T	T										T	.	T							T	T	S								S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S		S						S
Template Predicted Secondary structure																							.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.																				.	.	.	.	.	.	80	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.								.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.																						.	.	.																	.	.	.	.	.	.	.
Query SS confidence												.	.																						.	.	.																	.	.	.	.	.	.	.
Query Sequence		K	D	V	P	S	V	I	P	E	G	.	.	L	T	L	G	C	I	P	D	R	E	L	P	F	D	A	Y	I	S	K	T	H	.	.	.	T	P	L	S	Q	L	P	E	G	S	I	I	G	T	S	S	.	.	.	.	.	.	.	L	R	R	G	A	Q	I	L	S	K	Y	P	N	L	E	I	K	W	I	R	G
Query Conservation												.	.																						.	.	.																	.	.	.	.	.	.	.
Alig confidence												.	.																						.	.	.							.										.	.	.	.	.	.	.														.
Template Conservation																																												.																														.
Template Sequence		I	P	P	L	F	A	Q	A	A	G	A	D	L	L	Y	V	G	W	V	P	P	T	P	K	A	E	T	I	L	V	P	S	K	S	A	L	R	T	V	A	D	L	.	K	G	K	R	I	A	F	Q	K	G	S	S	A	H	N	L	L	L	R	V	L	A	K	S	G	L	S	M	R	.	D	I	T	P	L	Y	L
Template Known Secondary structure										T	T													G	G	G							T	T					S	G	G	G	G	.	T	T							T	T	S													T	T			G	G	.	G	S
Template Predicted Secondary structure																																												.																														.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	D	T	R	L	E	K	L	Q	T	E	D	Y	D	A	I	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	P	A	N	A	R	A	A	F	A	A	G	Q	V	D	A	W	A	I
Template Known Secondary structure												T	T			S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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