Job Description O34090 Confidence 33.19% Date Tue Jul 17 17:05:02 BST 2012 Rank 59 Aligned Residues 176 % Identity 12% Template c2y7iB_ PDB info PDB header:arginine-binding protein Chain: B: PDB Molecule:stm4351; PDBTitle: structural basis for high arginine specificity in salmonella2 typhimurium periplasmic binding protein stm4351. Resolution 1.90 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	Q	F	I	D	K	L	K	A	V	E	P	N	L	E	I	E	I	K	E	I	V	T	K	G	D	R	I	V	D	K	Q	L	S	K	V	G	G	K	G	L	F	V	K	E	I	Q	H	E	L	F	E	K	N	I	D	M	A	I	H	S	L	K	D	V	P	S	V	I	P	E	G	L	T	L	G	C	I	P
Query Conservation
Alig confidence													.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	V	A	N	A	V	C	K	E	M	.	.	Q	A	E	C	S	F	T	N	Q	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	S	L	I	P	S	L	R	F	K	K	F	D	A	V	I	A	G	M	D	M	T	P	K	R	E	Q	Q	V	S	F	S	Q	P	Y	Y
Template Known Secondary structure												T	.	.	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G							T	T	S		S				S	S		B							T	T	S				S		S	B
Template Predicted Secondary structure													.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70																					.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	E	L	P	F	D	A	Y	I	S	K	T	H	T	P	L	S	Q	L	P	E	G	S	I	I	G	T	S	S	L	R	R	G	A	Q	I	L	S	K	Y	P	N	L	E	I	K	W	I	R	G	N	I	D	T	R	L	E	K	L	Q	T	E	D	Y	D	A	I	I	L	A	A	A	G	L	R	R	M	G	W
Query Conservation
Alig confidence																																																			.
Template Conservation																																																			.
Template Sequence		E	G	L	S	A	V	V	V	T	R	K	G	A	Y	H	T	F	A	D	L	K	G	K	K	V	G	L	E	N	G	T	T	H	Q	R	Y	L	Q	D	K	Q	Q	A	I	T	P	V	A	Y	.	D	S	Y	L	N	A	F	T	D	L	K	N	N	R	L	E	G	V	F	G	D	V	A	A	I	G	K	W	L	K
Template Known Secondary structure												T	T	T			S	G	G	G	G	T	T							T	T	S											T	T	S						.	S											T	T	S		S														T
Template Predicted Secondary structure																																																			.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	D	I	V	T	S	Y	L	D	R	D	T	L	L	P	A	I	G	Q	G	A	L	G	I	E	C	R	S	D	D	E	E	L	L	T	L	L	S	K
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		N	N	P	D	.	Y	A	I	M	D	E	R	A	S	D	P	D	Y	Y	G	K	G	L	G	I	A	V	R	K	D	N	D	A	L	L	Q	E	I	N	A
Template Known Secondary structure		T		T	T	.					S	S		B			T	T	T	S		S		B						T	T
Template Predicted Secondary structure						.
Template SS confidence
		187	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions