Job Description O34090 Confidence 97.36% Date Tue Jul 17 17:05:02 BST 2012 Rank 9 Aligned Residues 209 % Identity 14% Template c2x26A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli Resolution 1.75 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	L	V	V	G	S	R	R	S	K	L	A	L	T	Q	S	Q	Q	F	I	D	K	L	K	A	V	E	P	N	L	E	I	E	I	K	E	I	V	T	K	G	D	R	I	V	D	K	Q	L	S	K	V	G	G	K	G	L	F	V	K	E	I	Q	H	E	L	F	E	K	N	I	D	M	A	I	H	S	L	K
Query Conservation
Alig confidence																					.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	L	A	K	S	.	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I
Template Known Secondary structure		S								T	T										.	T	T							T	T	S								S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	S		S						S
Template Predicted Secondary structure																					.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.																				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.							.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure											.	.																						.	.	.																.	.	.	.	.	.
Query SS confidence											.	.																						.	.	.																.	.	.	.	.	.
Query Sequence		D	V	P	S	V	I	P	E	G	.	.	L	T	L	G	C	I	P	D	R	E	L	P	F	D	A	Y	I	S	K	T	H	.	.	.	T	P	L	S	Q	L	P	E	G	S	I	I	G	T	S	.	.	.	.	.	.	S	L	R	R	G	A	Q	I	L	S	K	Y	P	N	L	E	I	K	W	I	R	G	N	I
Query Conservation											.	.																						.	.	.																.	.	.	.	.	.
Alig confidence											.	.																						.	.	.							.									.	.	.	.	.	.
Template Conservation																																											.
Template Sequence		P	P	I	F	A	Q	A	A	G	A	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	.	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P
Template Known Secondary structure									T	T													G	G	G							T	T		S			S	G	G	G	G	.	T	T	S						T	T	S													T	T			G	G	G	S
Template Predicted Secondary structure																																											.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		D	T	R	L	E	K	L	Q	T	E	D	Y	D	A	I	I	L	A	A	A	G	L	R	R	M	G	W	S	D	D	I	V	T	S	Y	L	D	R	D	T	L	L	P	A	I	G	Q	G	A	L	G	I	E	.	.	C	R	S	D	D	E	E	L	L	T	L	L	S	K	V	H	N	D	E	V	A	K	C	V	T
Query Conservation																																																							.	.
Alig confidence																																.	.																						.	.
Template Conservation																																.	.
Template Sequence		A	D	A	R	A	A	F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	.	.	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	E	A	D	A	L	T	R	S	Q
Template Known Secondary structure										T	T	S	S	S						T	T									S	S	.	.							S	T	T	S																	T																					T
Template Predicted Secondary structure																																.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		229	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	R	T	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	Q	S	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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