Job Description O34090 Confidence 57.00% Date Tue Jul 17 17:05:02 BST 2012 Rank 46 Aligned Residues 149 % Identity 11% Template c2o1mB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable amino-acid abc transporter PDBTitle: crystal structure of the probable amino-acid abc2 transporter extracellular-binding protein ytmk from3 bacillus subtilis. northeast structural genomics4 consortium target sr572 Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		K	E	I	Q	H	E	L	F	E	K	N	I	D	M	A	I	H	S	L	K	D	V	P	S	V	I	P	E	G	L	T	L	G	C	I	P	D	R	E	L	P	F	D	A	Y	I	S	K	T	H	T	.	.	P	L	S	Q	L	P	E	G	S	I	I	G	T	S	S	L	R	R	G	A	Q	I	L	S	K	Y	P
Query Conservation																																																					.	.
Alig confidence																																																					.	.						.
Template Conservation																																																												.
Template Sequence		S	N	L	L	V	S	L	G	Q	H	K	V	D	I	V	A	H	Q	X	E	K	S	K	E	R	E	K	K	F	L	F	N	K	V	A	Y	N	H	F	P	L	K	I	T	V	L	Q	N	N	D	T	I	R	G	I	E	D	L	.	K	G	K	R	V	I	T	S	A	G	A	L	V	L	K	K	W	N	E	D	N
Template Known Secondary structure		G	G						G	G	G	S		S				S																S	S													T	T			S		S	S	G	G	G		.	T	T																	T	T	T
Template Predicted Secondary structure																																																												.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	E	I	K	W	I	R	G	N	I	D	T	R	L	E	K	L	Q	T	E	D	Y	D	A	I	I	L	A	A	A	G	L	R	R	M	G	W	S	D	D	I	V	T	S	Y	L	D	R	D	T	L	L	P	A	I	G	Q	G	A	L	G	I	E	C	R	S	D	D	E	E	L	L	T	L	L	S	K
Query Conservation
Alig confidence										.																																						.	.	.	.	.
Template Conservation										.																																						.	.	.	.	.
Template Sequence		G	R	P	F	E	I	A	Y	.	E	A	N	E	T	A	N	Q	L	K	S	G	R	A	D	A	T	I	S	T	P	F	A	V	D	F	Q	N	K	T	S	T	I	K	E	K	T	.	.	.	.	.	V	G	N	V	L	S	N	A	K	V	Y	F	X	F	N	K	N	E	Q	T	L	S	D	D	I	D	K
Template Known Secondary structure		T			S					.												S	S		S																	S	S					.	.	.	.	.																G	G	G
Template Predicted Secondary structure										.																																						.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.						.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions