Job Description O34090 Confidence 30.96% Date Tue Jul 17 17:05:02 BST 2012 Rank 60 Aligned Residues 171 % Identity 11% Template c2ieeB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable abc transporter extracellular-binding PDBTitle: crystal structure of yckb_bacsu from bacillus subtilis.2 northeast structural genomics consortium target sr574. Resolution 2.20 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	Q	F	I	D	K	L	K	A	V	E	P	N	L	E	I	E	I	K	E	I	V	T	K	G	D	R	I	V	D	K	Q	L	S	K	V	G	G	K	G	L	F	V	K	E	I	Q	H	E	L	F	E	K	N	I	D	M	A	I	H	S	L	K	D	V	P	S	V	I	P	E	G	L	T	L	G	C	I	P
Query Conservation
Alig confidence													.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template Conservation													.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template Sequence		V	E	V	V	R	E	A	A	K	R	L	.	.	G	L	K	V	E	F	K	E	X	G	I	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	X	L	T	A	V	N	S	G	Q	V	D	A	A	A	N	D	I	D	V	T	K	D	R	E	E	K	.	.	.	F	A	F	S	T
Template Known Secondary structure											T	T	.	.	T										S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S	S	S				S	S		B							T	T	.	.	.
Template Predicted Secondary structure													.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.																					.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.					.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		D	R	E	L	P	F	D	A	Y	I	S	K	T	H	.	.	.	.	T	P	L	S	Q	L	P	E	G	S	I	I	G	T	S	S	L	R	R	G	A	Q	I	L	S	K	Y	P	N	L	E	I	K	W	I	R	G	N	I	D	T	R	L	E	K	L	Q	T	E	D	Y	D	A	I	I	L	A	A	A	G	L	R
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.																																				.
Template Conservation																																																							.
Template Sequence		P	Y	K	Y	S	Y	G	T	A	I	V	R	K	D	D	L	S	G	I	K	T	L	K	D	L	K	G	K	K	A	A	G	A	T	T	V	Y	X	E	V	A	R	K	Y	G	A	K	E	V	I	Y	D	N	.	A	T	N	E	Q	Y	L	K	D	V	A	N	G	R	T	D	V	I	L	N	D	Y	Y	L	Q	T
Template Known Secondary structure			S											T	T	T	G	G	G		S	S	G	G	G	G	T	T								S									T	T							S	S	.												T	T	S
Template Predicted Secondary structure																																																							.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	G	W	S	D	D	I	V	T	S	Y	L	D	R	D	T	L	L	P	A	I	G	Q	G	A	L	G	I	E	C	R	S	D	D	E	E	L	L	T	L	L	S	K
Query Conservation
Alig confidence																.	.	.
Template Conservation																.	.	.
Template Sequence		L	A	L	A	A	F	P	D	L	N	I	T	I	H	.	.	.	P	D	I	K	Y	X	P	N	K	Q	A	L	V	X	K	K	S	N	A	A	L	Q	K	K	X	N	E
Template Known Secondary structure								T	T	S	S					.	.	.	S	S														T	T
Template Predicted Secondary structure																.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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