Job Description O50581 Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012 Rank 12 Aligned Residues 377 % Identity 16% Template c3rc8A_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase supv3l1, mitochondrial; PDBTitle: human mitochondrial helicase suv3 in complex with short rna fragment Resolution 2.90 Å

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		152	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		E	P	V	Y	R	.	I	K	E	G	I	K	Q	K	Q	I	R	D	Q	I	R	Q	A	L	N	D	V	T	I	H	E	W	L	T	D	E	L	R	E	K	Y	K	L	E	T	L	D	F	T	L	N	T	L	H	H	P	K	S	K	E	D	L	L	R	A	R	R	T	Y	A	F	T	E	L	F	L	F	E	L	R
Query Conservation							.
Alig confidence							.																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	V	K	P	Q	G	P	S	P	L	D	K	N	E	V	K	K	V	L	D	K	F	Y	K	R	K	E	I	Q	K	L	G	A	D	Y	G	L	D	A	R	L	F	H	Q	A	F	I	S	F	R	N	Y	I	M	Q	S	H	S	L	D	V	D	I	H	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																																					T	T																					S	S									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.							.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.
Query Sequence		M	Q	W	L	N	R	L	E	K	S	S	D	E	A	I	E	I	D	Y	D	I	D	Q	V	K	S	F	I	D	R	L	P	F	E	L	T	E	A	Q	K	S	S	V	.	.	.	.	.	.	N	E	I	F	R	D	L	K	A	P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I
Query Conservation																																													.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																							.	.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	L	N	D	I	C	F	G	A	A	H	A	D	D	L	F	P	F	F	L	R	H	A	K	Q	I	F	P	V	L	D	C	K	D	D	L	R	K	I	S	D	L	R	I	P	P	N	W	Y	P	D	A	R	A	M	Q	R	K	I	I	F	H	S	G	P	T	N	S	G	K	T	Y	H	A	I	Q
Template Known Secondary structure		.	.	.	.	.							S	S			G	G	G	G													G	G	G	G									T	B				G	G	G	G						T	S										S	S	S	S	S	T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	M	Y	A	L	K	T	A	G	Y	Q	S	A	L	M	V	P	T	E	I	L	A	E	Q	H	A	E	S	L	M	A	L	F	G	D	S	M	N	V	A	L	L	T	G	S	V	K	G	K	K	R	K	I	L	L	E	Q	L	E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	Q	D	D	V	I	F	H
Query Conservation
Alig confidence						.	.	.	.																									.	.	.															.	.	.	.	.	.																				.	.	.
Template Conservation						.	.	.	.																									.	.	.															.	.	.	.	.	.																				.	.	.
Template Sequence		K	Y	F	S	.	.	.	.	A	K	S	G	V	Y	C	G	P	L	K	L	L	A	H	E	I	F	E	K	S	N	A	A	.	.	.	G	V	P	C	D	L	V	T	G	E	E	R	V	T	.	.	.	.	.	.	V	Q	P	N	G	K	Q	A	S	H	V	S	C	T	V	E	M	C	S	.	.	.	V	T	T
Template Known Secondary structure						.	.	.	.	S	S	S						S	S														T	.	.	.	T								S	S					.	.	.	.	.	.		S	S	S	S				S						G	G	G			.	.	.	S	S	S
Template Predicted Secondary structure						.	.	.	.																									.	.	.															.	.	.	.	.	.																				.	.	.
Template SS confidence
		220	.	.	.					.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260	.							.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280				.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.							.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.																			.
Query SS confidence																				.	.	.	.	.	.																			.
Query Sequence		N	V	G	L	V	I	T	D	E	Q	H	R	F	G	V	N	Q	R	.	.	.	.	.	.	Q	L	L	R	E	K	G	A	M	T	N	V	L	F	M	T	A	T	.	P	I	P	R	T	L	A	I	S	V	F	G	E	M	D	V	S	S	I	K	Q	L	P	K	G	R	K	P	I	I	T	T	W	A	K	H	E
Query Conservation																				.	.	.	.	.	.																			.
Alig confidence																				.	.	.	.	.	.																			.
Template Conservation
Template Sequence		P	Y	E	V	A	V	I	D	E	I	Q	M	I	R	D	P	A	R	G	W	A	W	T	R	A	L	L	G	L	C	A	E	E	V	H	L	C	G	E	P	A	A	I	D	L	V	M	E	L	M	Y	T	T	G	E	E	V	E	V	R	D	Y	K	R	L	T	P	I	S	V	L	D	H	A	L	E	S	L	D	N
Template Known Secondary structure											G	G	G	G	G		T	T	T																						G	G	G												T											S	S						S	S				S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530			.	.	.	.	.
Predicted Secondary structure																																																																											.	.
Query SS confidence																																																																											.	.
Query Sequence		Q	Y	D	K	V	L	M	Q	M	T	S	E	L	K	K	G	R	Q	A	Y	V	I	C	P	L	I	E	S	S	E	H	L	E	D	V	Q	N	V	V	A	L	Y	E	S	L	Q	Q	Y	Y	G	V	S	R	V	G	L	L	H	G	K	L	S	A	D	E	K	D	E	V	M	Q	K	F	.	.	S	N	H	E	I
Query Conservation																																																																											.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.												.	.																									.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.												.	.
Template Sequence		L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	G	D	C	I	V	C	F	S	K	N	.	.	.	.	.	.	.	.	.	D	I	Y	S	V	S	R	Q	I	E	I	.	.	R	G	L	E	S	A	V	I	Y	G	S	L	P	P	G	T	K	L	A	Q	A	K	K	F	N	D	P	N	D	P	C
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T						S	S			.	.	.	.	.	.	.	.	.												.	.	T	T								T	T	S															T	T		S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
		364															.	.	.	.	.	370	.	.	.	.	.	.										.	.	.	380	.	.	.	.	.	.	.			.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.			.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580				.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.																	.	.	.
Query SS confidence																															.	.																	.	.	.
Query Sequence		N	V	L	V	S	T	T	V	V	E	V	G	V	N	V	P	N	A	T	F	M	M	I	Y	D	A	D	R	F	.	.	G	L	S	T	L	H	Q	L	R	G	R	V	G	R	S	D	.	.	.	Q	Q	S	Y	C	V	L	I
Query Conservation																															.	.																	.	.	.
Alig confidence																		.													.	.																	.	.	.
Template Conservation																		.
Template Sequence		K	I	L	V	A	T	D	A	I	G	M	G	L	N	L	S	.	I	R	R	I	I	F	Y	S	L	I	K	E	P	I	T	T	S	Q	A	L	Q	I	A	G	R	A	G	R	F	S	S	R	F	K	E	G	E	V	T	T	M
Template Known Secondary structure								G	G	G	G	S	S					.	B	S					S		S	B			B											T	T	B				T	T	T			S						S
Template Predicted Secondary structure																		.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.		.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.