Job Description O50581 Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012 Rank 18 Aligned Residues 333 % Identity 17% Template c3i5yA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase mss116; PDBTitle: structure of mss116p bound to ssrna containing a single 5-bru and amp-2 pnp Resolution 2.49 Å

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		252	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.								.	.	.	.	.	320	.	.	.
Predicted Secondary structure															.																																																			.	.	.	.	.	.	.
Query SS confidence															.																																																			.	.	.	.	.	.	.
Query Sequence		D	Q	V	K	S	F	I	D	R	L	P	F	E	.	L	T	E	A	Q	K	S	S	V	N	E	I	F	R	D	L	K	A	P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I	C	M	Y	A	L	K	T	A	G	Y	.	.	.	.	.	.	.	Q	S	A	L	M	V	P	T	E
Query Conservation															.																																																			.	.	.	.	.	.	.
Alig confidence															.															.	.	.	.																																	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.
Template Sequence		K	E	I	H	K	A	I	T	R	M	E	F	P	G	L	T	P	V	Q	Q	K	T	I	K	P	I	L	S	.	.	.	.	S	E	D	H	D	V	I	A	R	A	K	T	G	T	G	K	T	F	A	F	L	I	P	I	F	Q	H	L	I	N	T	K	F	D	S	Q	Y	M	V	K	A	V	I	V	A	P	T	R
Template Known Secondary structure										T	T			S	S															.	.	.	.	S	S										T	T	S																	T	T	T	S	S	T	T	S								S	S
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.					.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.						340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.							.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																		.	.	.	.	.																																												.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.																																												.	.	.	.	.	.
Query Sequence		I	L	A	E	Q	H	A	E	S	L	M	A	L	F	G	D	.	.	.	.	.	S	M	N	V	A	L	L	T	G	S	V	K	G	K	K	R	K	I	L	L	E	Q	L	E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	Q	D	D	V	I	.	.	.	.	.	.	F	H	N	V	G	L	V	I	T	D
Query Conservation																		.	.	.	.	.																																												.	.	.	.	.	.
Alig confidence																		.	.	.	.	.																								.	.	.																		.	.	.	.	.	.
Template Conservation																																														.	.	.
Template Sequence		D	L	A	L	Q	I	E	A	E	V	K	K	I	H	D	M	N	Y	G	L	K	K	Y	A	C	V	S	L	V	G	G	T	D	F	R	A	A	M	N	K	M	N	K	L	.	.	.	R	P	N	I	V	I	A	T	P	G	R	L	I	D	V	L	E	K	Y	S	N	K	F	F	R	F	V	D	Y	K	V	L	D
Template Known Secondary structure																	T		G	G	G	G	G	S							T	T	S													.	.	.			S																						T	T
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		393	.	.													.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.								440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.
Query Sequence		E	Q	H	.	.	.	.	.	.	.	.	.	.	.	.	R	F	G	V	N	Q	R	Q	L	L	R	E	K	G	A	M	T	N	V	L	F	M	T	A	T	P	I	P	R	T	L	A	I	S	V	F	G	E	M	D	V	S	S	I	.	.	.	.	.	.	.	K	Q	L	P	K	G	R	K	P	I	I	T	T	W
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	D	R	L	L	E	I	G	F	R	D	D	L	E	T	I	S	G	I	L	N	E	K	N	S	K	S	A	D	N	I	K	T	L	L	F	S	A	T	L	D	D	K	V	Q	K	L	A	N	N	I	M	N	K	K	E	C	L	F	L	D	T	V	D	K	N	E	P	E	A	H	E	R	I	D	Q	S	V	V
Template Known Secondary structure		T					T	S	T	T	T																S	S		T	T									S	S			T						T	G	G	G			S	S							S	S		S	S	S		S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		454	.	.	.	.	.	460	.	.	.	.	.	.	.							.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.		.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.																																							.
Query SS confidence																.	.	.	.	.	.																																							.
Query Sequence		A	K	H	E	Q	Y	D	K	V	L	M	Q	M	T	.	.	.	.	.	.	S	E	L	K	K	G	R	Q	A	Y	V	I	C	P	L	I	E	S	S	E	H	L	E	D	V	Q	N	V	V	A	L	Y	E	S	L	Q	Q	Y	.	Y	G	V	S	R	V	G	L	L	H	G	K	L	S	A	D	E	K	D	E	V
Query Conservation																.	.	.	.	.	.																																							.
Alig confidence																.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.													.
Template Conservation																																							.	.	.	.	.	.	.	.	.
Template Sequence		I	S	E	K	F	A	N	S	I	F	A	A	V	E	H	I	K	K	Q	I	K	E	R	D	S	N	Y	K	A	I	I	F	A	P	T	V	K	.	.	.	.	.	.	.	.	.	F	T	S	F	L	C	S	I	L	K	N	E	F	K	K	D	L	P	I	L	E	F	H	G	K	I	T	Q	N	K	R	T	S	L
Template Known Secondary structure				S	S	S	T																	T	T	T									S	S			.	.	.	.	.	.	.	.	.														T	T	T	S						S	T	T	S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.										.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	K	F	S	N	H	E	I	N	V	L	V	S	T	T	V	V	E	V	G	V	N	V	P	N	A	T	F	M	M	I	Y	D	A	D	R	F	G	L	S	T	L	H	Q	L	R	G	R	V	G	R	S	D	Q	Q	S	Y	C	V	L	I	A	S	P	K	T	E	T	G	I	E	R	M	T
Query Conservation
Alig confidence																																							.
Template Conservation																																							.
Template Sequence		V	K	R	F	K	K	D	E	S	G	I	L	V	C	T	D	V	G	A	R	G	M	D	F	P	N	V	H	E	V	L	Q	I	G	V	P	S	.	E	L	A	N	Y	I	H	R	I	G	R	T	A	R	S	G	K	E	G	S	S	V	L	F	I	C	K	D	E	L	P	F	V	R	E	L	E
Template Known Secondary structure									S	S							G	G	G	T	S	S				T	T								S			S	.	S	T								T	T	S	S		T	T											G	G	G
Template Predicted Secondary structure																																							.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.		.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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