Job Description O50581 Confidence 93.16% Date Tue Jul 17 17:05:03 BST 2012 Rank 386 Aligned Residues 121 % Identity 8% Template c3hgtA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hda1 complex subunit 3; PDBTitle: structural and functional studies of the yeast class ii hda12 hdac complex Resolution 2.20 Å

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		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	Q	Y	D	K	V	L	M	Q	M	T	S	E	L	K	K	G	R	Q	A	Y	V	I	C	P	L	I	E	S	S	E	H	L	E	D	V	Q	N	V	V	A	L	Y	E	S	L	Q	Q	Y	Y	G	V	S	R	V	G	L	L	H	G	K	L	S	A	D	E	K	D	E	V	M	Q	K	F	S	N	H	E	I
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Sequence		S	G	K	F	S	V	L	R	D	L	I	N	L	V	Q	E	Y	E	T	E	T	A	I	V	C	R	P	G	R	T	M	D	L	L	E	A	L	L	.	.	.	.	.	.	.	.	.	.	.	L	G	N	K	V	H	I	K	R	Y	D	G	H	S	I	D	F	S	C	T	V	H	L	F	S	S	E	.	.	.	.
Template Known Secondary structure																T	T	S										S	T											.	.	.	.	.	.	.	.	.	.	.	T	T	S	S						S	S	S						S								S	S	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150												.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	L	V	S	T	T	V	V	E	V	G	V	N	V	P	N	A	T	F	M	M	I	Y	D	A	D	R	F	G	L	S	T	L	H	Q	L	R	G	R	V	G	R	S	D	Q	Q	S	Y	C	V	L	I	A	S	P	K	T	E	T	G	I	E	R
Query Conservation
Alig confidence		.	.	.																																						.	.	.	.	.
Template Conservation		.	.	.																																						.	.	.	.	.
Template Sequence		.	.	.	G	I	N	F	T	K	Y	P	I	K	S	K	A	R	F	D	M	L	I	C	L	D	T	T	V	D	T	S	Q	K	D	I	Q	Y	L	L	Q	.	.	.	.	.	Y	K	A	P	I	V	R	L	V	A	I	N	S	I	D	H	C	R	L
Template Known Secondary structure		.	.	.				T	T	T	S						S			S						S	T	T			T	T	S									.	.	.	.	.											T	T	S
Template Predicted Secondary structure		.	.	.																																						.	.	.	.	.
Template SS confidence
					185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.						.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions